Report for 4734.m00152

 > 4734.m00152, length: 1472, copies: 1 

MDTHNYETSKQKWALVWASGPAASHTLAASAPALPQPASRQSFLPSSTARWPRFPPVLGPLPRGATSHRESGISA

VRGPRGRIGENGEGLRAQTPTQADDAPWSHGAFEILLYLVSYYAISDLFNLIVRAIDYNEKQQNNEDQIMVRLEY

LSSPFNEKKNLYIPICSYALLLLIHLFTAAPVLFMAEVVLAGLCLAATPICVKLLINASTYLGVDMTHELHELET

TIIPQFELVIEAAEKGNHRVKLDRWLQELKQAFYNAEDLLDEHEYNILKCKAKNKDSLAKDSTQVHGSSISNILE

QPMHAVSSRMSNLWPEDRKILCQLNELKTILEKAKEFRELIHIPAGNSLEGPSVPTTIVPVVTSLLPPRVFGRDK

DRDRIIHLLTKPMATVSSSVGYSGLAIIAHGGAGKSTLAQYVYNDKTVQEHFDVRMWVCISRKLDVHRHTREIIE

SAENGQCPRVDNLDTLQCKLRDILQKSEKFLLVLDDVWFDEFNNETEWDQLLDPLVSQKEGSRVLVTSRQDVLPA

ALRCKDVVRLENMEDTEFLALFKHHAFSGTEIKNPQLRGRLEKIAEKIVNRLGHSPLAASTVGSQLSRNKDINLW

KSALNIENLSEPMKALLWSYNKLDSRLQRCFLYCSLFPKGHKYKIKEMVDLWVAEGLIDSHSPGDKRIEDVGRDY

FNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPTTVRHLSVRVESMKFHKQSICKL

RYLRTVICIDPLMDNGDDVFNQVLKNLKRLRVLYLSFYNSSRLPECIGELKHLRYLNIIKTLISELPRSLCTLYQ

LQLLQLNKKVKCLPDKLCNLSKLRRLEAFEDRIDELINAALPQIPYIGKLTLLQHIDGFFVQKKKGYELHQLGNM

NELGGNLRVMNLENVSGKDEASESKLHQKTHLRGLHLSWNDVYGMDVSHLEILEGLRPPSQLEDLTIEGYKSAMY

PSWLLDGSYFENLESFTLANCCGIGSLPPNTEIFRHCLTLTLENVPNMKTLSFLPEGLTSLSIVGCPLLVFTTNN

DELEHHDYRESITRASNLETQLVLIWEADSDSDIRRTLLSEHSSMKKLTELMDTDISGNLQTIESALKIERDEAL

VKEDIIKVWLCCHEERMRFIYSRKVGLPFVPPSGLCELNLFSCSITDGALAICLGGLTSLRNLFLTEIMTLTTLP

PEEVLQHLGNLRYLVIRSCWCLRSFGGLRSATSLSEIRLFSCPSLQLARGAEFMQMSLEKLCVYNCVLSADFFCG

DWPHLDDILLSGCRSSSSLHVGDLTSLESFSLYHFPDLCTLEGLSSLQLHHVHLIDVPKLTTESISQFRVQRSLY

ISSSVMLNHMLSAEGFVVPEFLSLESCKEPSVSFEESANFTSVKCLRLCNCEMRSPPGNMKCLSSLTKLDIYDCP

NISSIPDLPSSLQHICIWGCELLKESCRAPEGESWPKIAHIRWKEFR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	354	663	2.8e-42
NB-ARC [Pfam fs]	406	663	1.5e-45
LRR [Pfam ls]	1415	1438	0.074

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	802	824	2.3
LRR [sensitive, ls]	802	824	46
LRR [sensitive, ls]	931	957	2.8
LRR [sensitive, ls]	931	957	55
LRR [sensitive, ls]	987	1010	2.1
LRR [sensitive, ls]	987	1010	41
LRR [sensitive, ls]	1159	1183	2.2
LRR [sensitive, ls]	1159	1183	44
LRR [sensitive, ls]	1184	1206	6.9
LRR [sensitive, ls]	1184	1206	140
LRR [sensitive, ls]	1210	1232	2.1
LRR [sensitive, ls]	1210	1232	41
LRR [sensitive, ls]	1257	1281	5.6
LRR [sensitive, ls]	1257	1281	110
LRR [sensitive, ls]	1392	1414	4.4
LRR [sensitive, ls]	1392	1414	87
LRR [sensitive, ls]	1415	1438	0.0037
LRR [sensitive, ls]	1415	1438	0.074

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	220	1466	3e-94
Xa1 [Oryza sativa]	305	1322	4e-88
Pib [Oryza sativa].	369	989	4e-29
Pi-ta [Oryza sativa]	369	834	1e-22
Mla1 [Hordeum vulgare].	377	903	2e-31
RPM1 [A. thaliana]	400	1028	5e-40
RPS2 [A. thaliana]	400	1028	1e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	35	in -> out
putative TM domain	106	128	out -> in
putative TM domain	168	190	in -> out

Report for 4734.m00152

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)