Report for 4739.m00118

 > 4739.m00118, length: 1064, copies: 1 

MALVFFFFVVFHLAVLMAALLLASAPAFATADDLSALLAFRARVSDPSGVLRRGNWTAAAPYCGWLGVTCGGHRH

PLRVTALELPGVQLAGSLAPELGELTFLSTLNLSDARLSGPIPDGIGNLPRLLSLDLSSNRLSGNLPSSLGNLTV

LEILDLDSNNLTGEIPPDLHNLKNIMYLGLSRNELSGQIPRGMFNGTSQLVFLSLAYNKLTGSIPGAIGFLPNIQ

VLVLSGNQLSGPIPASLFNMSSLVRMYLGKNNLSGSIPNNGSFNLPMLQTVNLNTNHLTGIVPQGFGACKNLQEF

ILFSNGFTGGIPPWLASMPQLVNVSLGGNDLSGEIPASLGNLTGLTHLDFTRSNLHGKIPPELGQLTQLRWLNLE

MNNLTGSIPASIRNMSMISILDISFNSLTGSVPRPIFGPALSELYIDENKLSGDVDFMADLSGCKSLKYLVMNTN

YFTGSIPSSIGNLSSLQIFRAFKNQITGNIPDMTNKSNMLFMDLRNNRFTGEIPVSITEMKDLEMIDFSSNELVG

TIPANIGKSNLFALGLAYNKLHGPIPDSISNLSRLQTLELSNNQLTSAVPMGLWGLQNIVGLDLAGNALTGSLPE

VENLKATTFMNLSSNRFSGNLPASLELFSTLTYLDLSYNSFSGTIPKSFANLSPLTTLNLSFNRLDGQIPNGGVF

SNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILATGIIAICLLFSIKFCTGKKLKGLPIT

MSLESNNNHRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSFEVECRALRMA

RHRNLVRILTTCSNLDFKALVLQYMPNGSLDEWLLYSDRHCLGLMQRVSIMLDAALAMAYLHHEHFEVVLHCDLK

PSNVLLDADMTACIADFGIARLLLGEDTSIFSRSMPGTIGYMAPEYGSTGKASRKSDVFSYGVMLLEVFTGKKPT

DAMFVGELSLREWVNRALPSRLADVVHPGISLYDDTCTRDLPEDRVTMKDVTVKLQRIKESSMGKSDYHQLASLN

LTAFNNRHVKWRLV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	102	125	0.88
LRR [Pfam ls]	126	149	0.11
LRR [Pfam ls]	150	173	0.0033
LRR [Pfam ls]	174	198	6.8
LRR [Pfam ls]	199	222	0.33
LRR [Pfam ls]	223	246	0.04
LRR [Pfam ls]	247	271	5.7
LRR [Pfam ls]	272	295	7.2
LRR [Pfam ls]	296	319	1.3
LRR [Pfam ls]	320	343	0.49
LRR [Pfam ls]	344	367	0.53
LRR [Pfam ls]	368	391	0.86
LRR [Pfam ls]	441	464	5
LRR [Pfam ls]	535	558	4.1
LRR [Pfam ls]	559	582	0.14
LRR [Pfam ls]	583	605	0.2
LRR [Pfam fs]	630	653	7.7e-05
LRR [Pfam ls]	630	653	0.0013
Ser/Thr pkinase [Pfam fs]	774	976	3.1e-48
Ser/Thr pkinase [Pfam ls]	774	1032	8.3e-45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	102	125	0.045
LRR [sensitive, ls]	102	125	0.88
LRR [sensitive, ls]	126	149	0.0054
LRR [sensitive, ls]	126	149	0.11
LRR [sensitive, ls]	150	173	0.00017
LRR [sensitive, ls]	150	173	0.0033
LRR [sensitive, ls]	174	198	0.35
LRR [sensitive, ls]	174	198	6.8
LRR [sensitive, ls]	199	222	0.017
LRR [sensitive, ls]	199	222	0.33
LRR [sensitive, ls]	223	246	0.002
LRR [sensitive, ls]	223	246	0.04
LRR [sensitive, ls]	247	271	0.29
LRR [sensitive, ls]	247	271	5.7
LRR [sensitive, ls]	272	295	0.37
LRR [sensitive, ls]	272	295	7.2
LRR [sensitive, ls]	296	319	0.066
LRR [sensitive, ls]	296	319	1.3
LRR [sensitive, ls]	320	343	0.025
LRR [sensitive, ls]	320	343	0.49
LRR [sensitive, ls]	344	367	0.027
LRR [sensitive, ls]	344	367	0.53
LRR [sensitive, ls]	368	391	0.044
LRR [sensitive, ls]	368	391	0.86
LRR [sensitive, ls]	415	440	1.8
LRR [sensitive, ls]	415	440	36
LRR [sensitive, ls]	441	464	0.25
LRR [sensitive, ls]	441	464	5
LRR [sensitive, ls]	488	511	1
LRR [sensitive, ls]	488	511	20
LRR [sensitive, ls]	512	532	2.2
LRR [sensitive, ls]	512	532	44
LRR [sensitive, ls]	535	558	0.21
LRR [sensitive, ls]	535	558	4.1
LRR [sensitive, ls]	559	582	0.0069
LRR [sensitive, ls]	559	582	0.14
LRR [sensitive, ls]	583	605	0.0099
LRR [sensitive, ls]	583	605	0.2
LRR [sensitive, ls]	606	629	3
LRR [sensitive, ls]	606	629	59
LRR [sensitive, ls]	630	653	6.7e-05
LRR [sensitive, ls]	630	653	0.0013
LRR [sensitive, ls]	654	676	0.76
LRR [sensitive, ls]	654	676	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	670	1e-102
Xa21 [O. sativa]	1	874	1e-122
Cf-9 [L. pimpinellifolium]	3	693	7e-63
CLV2 [A. thaliana]	4	645	3e-71
CLV2 [A. thaliana]	76	364	4e-29
FLS2 [A.thaliana]	79	285	1e-30
FLS2 [A.thaliana]	86	1034	1e-142
CLV2 [A. thaliana]	227	676	2e-52
CLV2 [A. thaliana]	320	670	2e-30
Cf-9 [L. pimpinellifolium]	372	697	2e-15
Rpg1 [Hordeum vulgare]	760	973	6e-25
Pto [L. esculentum]	766	1036	6e-33
Rpg1 [Hordeum vulgare]	771	1049	8e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out
putative TM domain	716	738	out -> in

Report for 4739.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)