Report for 4763.m00141

 > 4763.m00141, length: 1091, copies: 1 

MDLVVGASSEAVKSLTGKLGSLLAQEYTLIAGVRDDIQYINDELASMQAFLSKLKRRDVDHDEQRQDWMKQVREV

AYDIKDCVDDVGHRLGREPRGSGAAISFQRAWYLLTTLYKRRRIAAEIGNLKLRAQHVSERRTRYGVENLQGNGG

GGGSGSGLGVGANAPRDRLAPLPRLIGTMEPVGMDAAIDELQEWFSKGKDGTQQRYLAIVGFGGLGKTTLAMALY

RKLGDEFDCRAFVLASQKFHLPTVLRSLVKQFHEKQADASEDTLHGIEGWGDEMLKKKLLEQLTGKRYHILVDDI

WSVSAWENIRDSFPKSDKGSCVVVTTRFNSVAEACRRQQGHVHKLKQLDPESSYNLFLQIISANDLCPIRPINAR

IIMKTCGGLPLAIVVVAGLIASKMKSKIDLTLDQHLVDVDEALSAELGSNLTTEGVTQIINHCYKNLPPDLKTCL

LYLSTFPKGRSISRKHLIRRWIAEGFITEEHGKTAEEVAEDSLNELIGRNLIKPIKNSSNGRVKSCQIHDMVLQY

IVSKSSDENFIAVIGGHWQTPLPSYKVRRLSVHKSDKQETDMVERMKLSHVRSLTVLESFSALHSTMLKFQILQV

LDLDGCKDLSHPHQLKKICNMYQLKYLGLRRTDIDKIPKNIGRLEYLEVLDIRETNVRKLPTSFAKLQRMTHLLA

GNKSKRTALKLTEEITKVVALQTLSGIEISGSSTLEEDREQPRDMPIRHSTTTRAEERGNTALHGPHKEASKVDL

PKQLRPLEALEKLTNLKKLAIYKLVKFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLESSLSSSQAAPEHLY

TLELSGMLSKAPGWIDRLHNLEKLTLSLTSLKTDTLVVLSSLPELFSLTFSLHAADNDSNALKIIHRNTMKSGGK

IFVLDEGFEKLKLLHFAAPVLPSLSFLEGAMPELQRLELRFRMVDYMYGLENLSKLQQNQAPILSSYVKYKNCSV

AAALQDYAWVATGQYQRGVILASRLGFICPQPTLHLLPWWLAVRKTICKQEQRAFNAGVILVTWLIWKEQNARVF

EGKATMVFALCVVIIDEWRMWKVAALFTLGLGCIGALRVLM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	165	398	1.9e-32
NB-ARC [Pfam ls]	165	482	2.3e-47
NB-ARC [Pfam fs]	428	482	1.4e-15
LRR [Pfam ls]	646	668	3.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	597	619	4.9
LRR [sensitive, ls]	597	619	54
LRR [sensitive, ls]	623	645	0.84
LRR [sensitive, ls]	623	645	9.2
LRR [sensitive, ls]	646	668	0.33
LRR [sensitive, ls]	646	668	3.6
LRR [sensitive, ls]	845	868	1.8
LRR [sensitive, ls]	845	868	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	673	3e-81
Pi-ta [Oryza sativa]	4	657	2e-68
RPM1 [A. thaliana]	17	958	7e-66
Pib [Oryza sativa].	47	357	1e-15
RPS2 [A. thaliana]	182	655	6e-26
Pib [Oryza sativa].	182	984	6e-74
I2 [L. esculentum]	189	701	4e-33
Xa1 [Oryza sativa]	207	705	5e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4763.m00141

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)