Report for 4763.m00142

 > 4763.m00142, length: 960, copies: 1 

MGRTSIMEKKEAALKELEPLLESVSKLLKSGRFTDAHERHGLAFLEMELGAIVAYLRMPMSPSIGDHDDGAHYDL

MTWMSVLIGVRNTVTAIVKFLSNQPCVPLRKATRRFRRRRSFGYDIPRKVYPLYLVFNGLRSELMPSPPQAAQVE

ACTVHDHLVAIDGTANELLGWLMAADESLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHIVANFSRRPHGSK

LVPQTILKQIIEQLEAPSSPNSSEITMLGDDLELLARNISERLKDKRYFALIDNIFNESDLELIKGAFPNNNCGS

RILFTAGDERIAGWCLSNYNGIVHKMKPLSHSDSEKLLHIKAFGSMDDCPPENLKLLCDEILMKCRGIPSFITGM

ADWLKQHQQQHGSSAIPRVEEVRLLLKQFEHWLSFDYSDELRQSLLYLSMLPQGYVFEKDRLVMKWLDEGLLSEL

HFSEMVDRNIITPAARNCGHNLDEDDLCLWQVNPFILRFLAYRAAEKGYVITSATLNSAPRGGGKNTRIARRLAL

HHPDPQLPEMLQEMDLSHTRSLLISGAVNRTTVPLDKFGYLVSLDLQGWENLKDEDLLQICKMLVLSYLSVSNTK

VSKLPPQIKELRTLNALDISHTHISEIPSEVCEPGSLRMLDLRGTQIKHMPEQIVRLKMLKHFLIDLSEFSERSV

KYLGDLHDLKILAITWAFHQCNDKAYQQALLSSLGKWRQLKSLTIHCGLGCSMEFLRSLSDPPKFLDEFKVTAGK

FANVPQWIEGLEHLTFLQITVCKQVAGDVKILAGLVKLQRLILGLEFIPEEAIVIESKGFKELEKFSLDCPVPRL

TFEEEAMPKLTYLRLNLHTSPMSEMSVPSGIGNLKMLSEVALCYNVRYMNSPNIKRKVEAVSKEVAKHRNPIDLF

IRGMQIEVNQAGEEEAEGATRFNQVNSPEDVVQAADEAAPRRETEFQSEIEDEGETECHA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	142	369	7e-19
NB-ARC [Pfam ls]	142	452	4.5e-19
LRR [Pfam ls]	590	612	5.2
LRR [Pfam ls]	613	633	5
LRR [Pfam ls]	636	658	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	590	612	0.48
LRR [sensitive, ls]	590	612	5.2
LRR [sensitive, ls]	613	633	0.46
LRR [sensitive, ls]	613	633	5
LRR [sensitive, ls]	636	658	0.18
LRR [sensitive, ls]	636	658	1.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	20	778	8e-20
Mla1 [Hordeum vulgare].	140	834	1e-47
Xa1 [Oryza sativa]	142	449	1e-11
Pi-ta [Oryza sativa]	149	767	9e-40
RPM1 [A. thaliana]	158	767	1e-26
I2 [L. esculentum]	174	868	7e-19
Pib [Oryza sativa].	177	662	4e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4763.m00142

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)