Report for 4763.m00143

 > 4763.m00143, length: 1065, copies: 1 

MTWSSVPLDGRIQPPSRITNERFLFPQSQPLAIVFSPKSCPTRRLRLERELWRGGVTETVKRKLIMDLVVGASSG

AVKSLVNKLGTLLAQEYTLISGVRDDIQYINDELASMQAFLSRLKRDVAHDEQRQDWMKQVREVAYDIEDCVDDV

RHRLGGEPRGTGTVVSLKRTWYLLTTLYQRCCIATDIGNLKVRAQHVSERRTRYGVENLPANRNGGGNNNSGAPG

DHPAPLPRLIGTTEPVGMDDAMNDLQRWFMVSKQNSQISYLAIVGSGGLGKTTLAMSFYRKFGDEFDSRAFMLAS

QKFHLPTVLRSLVSQFHQKQVSASEDALHGIEEWGVEALKKKLADQLQGKRYHILIDDIWSVSAWESIRDSLPKN

NKGSCVIVTTRFNSVAEACRRQNGHVHKLKQLDPVNSSKLFLQIIYANDPCPTPTINDEIVVKMCGGLPLAIIVV

SGLIASELKSKIGKPLDQKLIEVEKALRAELGNNLTTEVVQIINHCYKNLPPDLKTCLLYLSTFPKGRNISRKRL

IRRWVAEGFVTEKHGQTAEEVAEDNFNELIGRNLIRPINNSSNGKVKSCQIHDMVLEYIVSKSGDENFITVIGSH

WQTPFPSYKVRRLSVHKSDRQETDLVERMKLSHVRSLTVLESFKALHSTMLKFQILQVLDLEGCKDLSSNQLKKI

CNMHQMKYLSLRGTDIYKIPKKIGRLEYLEVLDIRDTDVTNLPASVERLQRMVHLLAGNKTKRRALRLTEGITKM

KTIQTLSGIEISGRSTRTAAGEQAPVLEVIRNATTTDAKDGDIAGLQGTRKEGSKVDMPKQLRPLAALEKLTNLK

KLAIYRLVNFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLDRSLSSSQAQPEHLYTLELSGSLFKVPEWIDR

LHNLEKLTLSMTSLTTDTLVTLSRLPELFSLIFSLDAANGISNILKTVQKNTLESGGKIFVPDGGFTKLRLLRFT

APVLPPLSFLEGAMPELQRLELRFRIIEFVYGLENLSSLQQVFLTFSSQAPEDAKEKVSQIKGLASKIRKADSSN

ISVVIDEYNELSKEQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	224	540	1e-40
NB-ARC [Pfam fs]	226	540	2.1e-41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	655	679	4.4
LRR [sensitive, ls]	655	679	48
LRR [sensitive, ls]	680	702	1.2
LRR [sensitive, ls]	680	702	13
LRR [sensitive, ls]	703	725	0.75
LRR [sensitive, ls]	703	725	8.2
LRR [sensitive, ls]	881	902	2.4
LRR [sensitive, ls]	881	902	26
LRR [sensitive, ls]	903	926	3
LRR [sensitive, ls]	903	926	33

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	66	730	6e-81
Pi-ta [Oryza sativa]	72	730	2e-75
RPM1 [A. thaliana]	73	1041	1e-62
Pib [Oryza sativa].	112	407	1e-16
Xa1 [Oryza sativa]	239	732	7e-26
Pib [Oryza sativa].	241	1020	1e-73
I2 [L. esculentum]	242	758	2e-32
RPS2 [A. thaliana]	266	712	1e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4763.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)