Report for 4763.m00144

 > 4763.m00144, length: 919, copies: 1 

MRCFRRPMSFNYDTPGKAYYLYRVFSNDPRLKLPSSELMPSLHQAAQVEAAAVHDHLVGIDGTANELLGWLMAAD

KSLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHVVAKLSRRPAHRSKQLLLQTILKQIMEQLEAPSSPNSSE

ITMLEDDPELLARNISECLKDKRYFALIDDIFDGSDLEMIKGAFPNNNCSSRILFTARDEQVSGWFLSNYNGVVH

QMKPLNDSDSEKLLRTKAFSSMDGCLPDNLRLLCDEILNMCRGIPLFITSMADWLKQHQQQYGSSAVPRVEQVRL

LLKQFEHLLSFDYSDELRQPSLYLSMFPQGYVFENKDHLATILEYEGFIPEWDLSPDFGKRYFSWLLNRKIIIPA

AENCGLNIDEDDLCQWQVNPFILRFLASRAAEMGLVFTSSTLTLAPSGGGNTTRIARRLALHHPDPQLPAMLQQM

DLSQTRSLLISGAVDRTTVPLDKFAYLVLLDLQGWENLKDEDLLQICKMFMLRYLSVRNTRVSKLPPQIKELHIL

GTLDVSHTTISEIPSEVWELKHLKMLDLRGTWIRHLPEKVKELTSLERLDISHTKISDLPSGVCRLPNLETLDLR

GTLISQLPDQIVRIKWLRNLIVGAAGAGSGMIDSDQTVLTKIPETIHQLRYLKTLATIDLSEFSVKSVQSLGDLK

QLEVLTITWSFHQCSDKDYQQALRSSIEGWWELKSMTIHCGLGCSMEFLGSLTEPPENLEKFKVIAGKFSRVPQW

IERLDRLTFLQITVCKQVADDVKILAGLIKLQRLVLGLEFIPENPIVIEKEGFKELERFSLDCPVPWLTFEEEAM

PKLTYLRLNLHASPASEMSVPSGINNLKELTEVTLCYNIRKDVIRSSDKKEESATGSEVDAAEDGAQAADEATLR

TTIQVQSEIEVEGDDVLLS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	41	271	2e-23
NB-ARC [Pfam ls]	41	354	4.7e-21
LRR [Pfam ls]	501	523	5.5
LRR [Pfam ls]	547	569	0.49
LRR [Pfam ls]	570	592	0.016
LRR [Pfam ls]	593	615	2.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	501	523	0.5
LRR [sensitive, ls]	501	523	5.5
LRR [sensitive, ls]	524	546	1.7
LRR [sensitive, ls]	524	546	19
LRR [sensitive, ls]	547	569	0.045
LRR [sensitive, ls]	547	569	0.49
LRR [sensitive, ls]	570	592	0.0015
LRR [sensitive, ls]	570	592	0.016
LRR [sensitive, ls]	593	615	0.26
LRR [sensitive, ls]	593	615	2.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	48	629	2e-35
Pib [Oryza sativa].	51	860	6e-33
RPM1 [A. thaliana]	57	551	2e-25
Mla1 [Hordeum vulgare].	57	599	2e-39
RPS2 [A. thaliana]	72	770	2e-15
I2 [L. esculentum]	73	888	7e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4763.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)