Report for 4763.m00162

 > 4763.m00162, length: 1186, copies: 1 

MDLVVGASSGAVKSLVNKLGSLLAQEYTLISGVHDDIQYINDELASMQAFLNRLKRDINHDEQRQDWMKQVREVA

YDIEDCVDDVSHRLGREPRGAGKLVTLRRAWYLLTTLYQRRCIAADIGNLKVRAQHVSERRTRYGVENLLANANG

GGNNNSGDPRDHPVSLPRLIGTVEPVGMEDAMNDLQRWFMVSKHNSQQQSQISYLAIVGSGGLGKTTLAMSFYRK

FGDEFNSRAFMLASQKFRLPTVLRSLVSQFHEKQVGASQDALQGIEEWGVEELKKKLADQLEGKRYHILIDDIWS

VSAWESIRDSLPKNDKGSCVIVTTRFNSVAEACRRQNGHVHKLKQLDPENSNKLFLQIISANGLCPTRTINDEIV

VKMCGCLPLAIVVVSGLIASELKSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTCLLYL

STFPKGRNISRKCLIRRWIAEGFVTDKHGQTAEEVAEDNFNELIGRNLIRPINNSSNGKVKSCQIHDMVLEYIVS

KSGEENFITVIGSHWQTPFPSYKVRRLSVHKSDRQETELVERMKLSHVRSLTVLESFKALHSNMLKFQILQVLDL

EGCKDLSSNQLKKICNMHQMKYLSLRGTDIHKIPKKIGKLEYLEVLDIRDTNVTNLPPSVERLQRMAHLLAGNKT

KRRALRLTEGITKMTTIQTLSGIEISGSLATFAGIIRNAVRYAEDGDITGLQGTSKEGSKVDMPKQLRPLAALEK

LTNLNKLAIYRIVKFSVKDDELLLSAIEHLSSCSLKFLVVDDNFTGFLYRSLSSSQAPPEHLYTLELSGSLFKVP

EWIDRLHNLEKLTLSLTSLTTHTLVTLSRLPELFSLIFSLDAAKDISNILKTVHKNTLESGGKIFVPDGGFTKLR

LLRFTAPVLPPLSFLEGAMPELQRLELRFRIIECVYGLENLSSLQQVFLTFSSQAPEDAKEKISQIKGLASKIRK

ADSSNISVEPTSPGYPPGGVYPVKASGRDNLVSEPLTMASDVERVLHVTFLLSSWAASGSISDKRIKPTGTPLNP

KARFRSCTRVKQISQASSMHKKPSMAATSTMAVVSPVRTDLHNQDQGVKSIEELRVVLKELATLIQEKLVKKEEW

HSKQEAIEQDMAVGMVMPSPISTPPTQPAGLEACRQRCLSSPLQPHPQVLKWCKRIKVTHG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	159	479	1.1e-34
NB-ARC [Pfam fs]	205	479	2.4e-36
LRR [Pfam ls]	642	664	2.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	618	4.4
LRR [sensitive, ls]	594	618	48
LRR [sensitive, ls]	619	641	0.55
LRR [sensitive, ls]	619	641	6
LRR [sensitive, ls]	642	664	0.21
LRR [sensitive, ls]	642	664	2.3
LRR [sensitive, ls]	811	832	2.4
LRR [sensitive, ls]	811	832	26
LRR [sensitive, ls]	833	856	2.4
LRR [sensitive, ls]	833	856	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	701	3e-77
Pi-ta [Oryza sativa]	7	669	4e-72
RPM1 [A. thaliana]	8	949	2e-64
Pib [Oryza sativa].	47	351	6e-18
Pib [Oryza sativa].	176	950	1e-75
Xa1 [Oryza sativa]	196	707	4e-27
RPS2 [A. thaliana]	198	658	7e-21
I2 [L. esculentum]	201	697	7e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4763.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)