Report for 4846.m00152

 > 4846.m00152, length: 986, copies: 2 

MALLEDRSAIPISLGAYLKLHHPLLLIEHYTLVLPYLAFTYTSRHSILSMADAVLPAFLQVLFQNAMELLKKKLE

FACDIDNEGQKLMSNMEMIQAVLRGGEKMKFNDEQRLWFSDLKDAGYDAMDVLDEYLYEVQRLLPILGEAYIGKT

TVAQLIINDKRVSRHFDVRIWAHVSPDFNIKRISASILESIYDKSHYDNLDTLQKHIQKRLRGKRFLLVLDDYWT

ENWHDWEEVKRPLLKASAGSKVIVTTRSGAVAKLLGMDLTYQLKLSIETSIKLKMEVLQKCNGVPFIAASLGHRL

HQKDKSKWVAILQEEICDANPNYFIRARQLSYAQLHSHLKPCFAYCSIIPREFQFEEWLIKHWMAQGFIQSKPDA

VATGSSYFRTLFEQSFFQRELVHHSGERHRYSMSRMMHELALHVSTDECYILGSPGEVPEKVRHLTVLLDEFASQ

NMFETISQCKHLHTLLVTGGNAGYELSIPKNLLNSTLKKLRLLELDNIEITKLPKSIGNLIHLRCLMLQGSKIRK

LPESICSLYNLQTLCLRNCYDLEKLPRRIKYLHKLRHIDLHLDDPSPDIHGLKDMPVDIGLLTDLQTLSRFVTSK

RNILDNHSNIKELDKLDNLCGELLISNLHVVKDAQEAAQAHLASKQFLQKMELSWKGNNKQAEQILEQLKPPSGI

KELTISGYTGISCPIWLGSESYTNLVTLSLYHFKSCTVVPSLWLLPLLENLHIKGWDALVKFCGSSSANFQALKK

LHFERMDSLKQWDGDERSAFPALTELVVDNCPMLEQPSHKLRSLTKITVEGSPKFPGLQNFPSLTSANIIASGEF

IWGSWRSLSCLTSITLRKLPMEHIPPGLGRLRFLRHLEIIRCEQLVSMPEDWPPCNLTRFSVKHCPQLLQLPNGL

QRLRELEDMEVVGCGKLTCLPEMRKLTSLERLEISECGSIQSLPSKGLPKKLQFLSVNKCPWLSSRCMVLGSTIS

SLWIDGELIRY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	82	374	3.3e-30
NB-ARC [Pfam fs]	147	258	2.4e-31
NB-ARC [Pfam fs]	329	374	3.1e-09
LRR [Pfam ls]	489	511	4.2
LRR [Pfam ls]	535	558	3.6
LRR [Pfam ls]	928	949	0.43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	489	511	0.18
LRR [sensitive, ls]	489	511	4.2
LRR [sensitive, ls]	512	534	0.33
LRR [sensitive, ls]	512	534	7.7
LRR [sensitive, ls]	535	558	0.15
LRR [sensitive, ls]	535	558	3.6
LRR [sensitive, ls]	772	795	1.4
LRR [sensitive, ls]	772	795	32
LRR [sensitive, ls]	835	857	0.83
LRR [sensitive, ls]	835	857	19
LRR [sensitive, ls]	881	904	0.97
LRR [sensitive, ls]	881	904	23
LRR [sensitive, ls]	905	927	1.9
LRR [sensitive, ls]	905	927	43
LRR [sensitive, ls]	928	949	0.018
LRR [sensitive, ls]	928	949	0.43

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	109	613	7e-32
I2 [L. esculentum]	115	980	8e-95
RPS2 [A. thaliana]	125	786	7e-29
RPP5 [A. thaliana]	137	944	1e-15
Pib [Oryza sativa].	137	537	2e-16
Pi-ta [Oryza sativa]	137	539	1e-11
Xa1 [Oryza sativa]	138	960	1e-59
Mla1 [Hordeum vulgare].	141	617	4e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4846.m00152

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)