Report for 4849.m00162

 > 4849.m00162, length: 997, copies: 1 

MKVTTATAHFLWVFLASISHSVICSTLRNETDRLSLLEFKNSITLNPHQSLISWNDSTHFCSWEGISCSSKNPPR

VTAIDLRNQGLVGHISPSLGNLTFLRNLSLATNGFTGQIPESLGHLRRLRSLYLSNNTLQGIIPSFANCSELTVL

WLDHNDLAGGFPGGLPLGLQELQLSSNRLVGTIPPSLSNITALRKLSFAFNGITGSIPGELATLSGVEILYASSN

RLLGGFPEAILNMSVLVALSLSTNSFSGELPSGIGSLLPNLRQIAIGINFFHGDIPSSLANASNLVKIDISENNF

TGVVPASIGKLANLTRLNLEMNQLHARSKQDWEFMDSVANCTQLQGISIARNQMEGEVPESIVREFSFRHCKSSQ

PDNSWTRLQPIFRFCTTMARRSEDIAETKLVYQQFYRVSSLLPFQSVTLDRDSSRHKSVHWKHTLSFGNLQFLTT

ITITDNNLHGGVPKEIFRIPTIAEVGFALNNLSGELPTEIGNAKQLIYLQLSSNNLSGDIPNTLSNCENLQHVEL

DQNNFSGGIPTSFGKLISLKFLNLSHNKLSGSIPVSLGDLQLLEQIDLSFNHLTGQVPTKGIFKNSTSMQIDGNL

ALCGGALELHLPECPITPSNTTKGKLPVLLKVVIPLASMVTLAVVILVLYLIWKGKQRTNSISLPSFGREFPKVS

YKDLARATNGFSTSNLIGEGRYGSVYQGQLFQDINVVAIKVFSLETKGAQKSFIAECNALRNVRHRNLVPVLTAC

SSIDSSGNDFKALVYEFMPRGDLHKLLYSTPHDETSSDLCYISLAQRLSIVVNVSDALAYLHHXHQGTIIHCDIK

PTNILLDDNMTAHVGDFGLARFKNDSRQSFGNSHLTSSFAINGTVGYVAPECAGGGQISTAADVYSFGVVLLEIF

IRRRPTDDMFKDGLSIAKFTEMNIPDKMLQIVDPQLVQELSLCKEDSVINDENGAQCVLSVLNIGLCCTDSAPSK

RISMQEAADKLHTIRDSYLRGY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	99	122	2.7
LRR [Pfam fs]	123	145	3.7e-05
LRR [Pfam ls]	123	145	0.00065
LRR [Pfam ls]	146	166	4.1
LRR [Pfam ls]	168	191	0.018
LRR [Pfam ls]	192	215	1.7
LRR [Pfam ls]	289	312	0.17
LRR [Pfam ls]	495	518	0.1
LRR [Pfam ls]	519	542	0.34
LRR [Pfam ls]	543	566	0.0032
Ser/Thr pkinase [Pfam fs]	686	908	3.1e-45
Ser/Thr pkinase [Pfam ls]	686	987	2.5e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	75	98	0.94
LRR [sensitive, ls]	75	98	10
LRR [sensitive, ls]	99	122	0.25
LRR [sensitive, ls]	99	122	2.7
LRR [sensitive, ls]	123	145	5.9e-05
LRR [sensitive, ls]	123	145	0.00065
LRR [sensitive, ls]	146	166	0.37
LRR [sensitive, ls]	146	166	4.1
LRR [sensitive, ls]	168	191	0.0016
LRR [sensitive, ls]	168	191	0.018
LRR [sensitive, ls]	192	215	0.16
LRR [sensitive, ls]	192	215	1.7
LRR [sensitive, ls]	216	239	1.8
LRR [sensitive, ls]	216	239	19
LRR [sensitive, ls]	240	264	0.8
LRR [sensitive, ls]	240	264	8.7
LRR [sensitive, ls]	265	288	6.7
LRR [sensitive, ls]	265	288	73
LRR [sensitive, ls]	289	312	0.015
LRR [sensitive, ls]	289	312	0.17
LRR [sensitive, ls]	343	367	1.9
LRR [sensitive, ls]	343	367	21
LRR [sensitive, ls]	447	471	0.8
LRR [sensitive, ls]	447	471	8.8
LRR [sensitive, ls]	495	518	0.0095
LRR [sensitive, ls]	495	518	0.1
LRR [sensitive, ls]	519	542	0.031
LRR [sensitive, ls]	519	542	0.34
LRR [sensitive, ls]	543	566	0.00029
LRR [sensitive, ls]	543	566	0.0032
LRR [sensitive, ls]	567	592	0.87
LRR [sensitive, ls]	567	592	9.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	599	7e-58
CLV2 [A. thaliana]	10	592	5e-45
Cf-9 [L. pimpinellifolium]	11	597	3e-42
Xa21 [O. sativa]	32	799	1e-132
CLV2 [A. thaliana]	67	322	5e-19
Cf-9 [L. pimpinellifolium]	68	346	4e-19
FLS2 [A.thaliana]	69	504	7e-37
Cf-9 [L. pimpinellifolium]	74	362	3e-19
CLV2 [A. thaliana]	75	309	1e-13
FLS2 [A.thaliana]	75	361	5e-32
FLS2 [A.thaliana]	81	346	8e-31
CLV2 [A. thaliana]	83	603	8e-33
Cf-9 [L. pimpinellifolium]	86	583	7e-37
FLS2 [A.thaliana]	86	990	1e-112
FLS2 [A.thaliana]	86	583	5e-62
Cf-9 [L. pimpinellifolium]	89	559	3e-29
Cf-9 [L. pimpinellifolium]	98	511	4e-31
FLS2 [A.thaliana]	200	600	1e-29
FLS2 [A.thaliana]	441	639	3e-23
Pto [L. esculentum]	654	940	3e-29
Rpg1 [Hordeum vulgare]	669	899	2e-22
Rpg1 [Hordeum vulgare]	683	899	1e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	632	653	out -> in

Report for 4849.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)