Report for 4861.m00142

 > 4861.m00142, length: 1850, copies: 1 

MAMTMLFSLLFCTAKATDDSGAETEAEALLRWKSTLIDATNSLSSWSIANSTCSWFGVTCDAAGHVTELDLLGAD

INGTLDALYSAAFENLTTIDLSHNNLDGAIPANICMLRTLTILDLSSNYLVGVIPINISMLIALTVLDLSGNNLA

GAIPANISMLHTLTILDLSSNYLVGVIPINISMLIALTVLDLSGNNLAGAIPANISMLHTLTFLDLSSNNLTGAI

PYQLSKLPRLAHLDSLPNLRVLELSNNGFHGTIPHSLSRLQKLQDLYLYRNNLTGGIPEELGNLTNLEALYLSRN

RLVGSLPPSFARMQQLSFFAIDSNYINGSIPLEIFSNCTWLNWFDVSNNMLTGSIPPLISNWTNLHYLALFNNTF

TGAIPWEIGNLAQVYLEVDMSQNLFTGKIPLNICNATLEYLAISDNHLEGELPGCLWGLKGLVYMDLSRNTFSGK

IAPSDTPNNDSDLLALDLSNNNFSGYFPVVLRNLSRLEFLNLGYNRISGEIPSWIGESFSHLMILQLRSNMFHGS

IPWQLSQLPKLQLLDLAENNFTGSIPDSRHYIDIDWKGREHPFKDISLLATGHIPHSISNLMSLEWLNLSNNLLS

GEIPTAFSTSFDANFVTRDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPD

DMKNFMENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEM

PLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSNLKEESASGFVRLLDAA

GLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASW

LEDVDGKQETRYAFIDEADHKTEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYT

QLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELG

FKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIK

VDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHE

VALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELE

SDAFVYTTPKKNLNASNFTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFTNDVQISIGDA

HSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITV

APEYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDE

VSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLD

LPKPEQGPETINQQYPTAMPVLATVGGLIIGSFLNVVIWRYPIMLRQQMAEFHGEMSSAQSKISLALPRSHCPHC

QQTIRIRDNIPLFSWLMLKGRCRDCQAKISKRYPLVELLTALAFLLASLVWPESGWGLAVMILSAWLIAASVIDL

DHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWV

GALSLPNVALIASCCGLIYAVITKRGSTTLPFGPCLSLGGIATLYLQALF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	90	113	0.19
LRR [Pfam ls]	138	161	0.45
LRR [Pfam ls]	186	209	0.45
LRR [Pfam ls]	210	233	0.016
LRR [Pfam ls]	243	266	0.01
LRR [Pfam fs]	267	290	4.4e-05
LRR [Pfam ls]	267	290	0.00074
LRR [Pfam ls]	291	314	0.018
LRR [Pfam ls]	364	387	7.3
LRR [Pfam ls]	412	435	1.2
LRR [Pfam ls]	462	485	0.87
LRR [Pfam ls]	486	510	0.52
LRR [Pfam ls]	535	555	6.7
LRR [Pfam ls]	588	611	0.12

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	90	113	0.0092
LRR [sensitive, ls]	90	113	0.19
LRR [sensitive, ls]	114	137	0.6
LRR [sensitive, ls]	114	137	12
LRR [sensitive, ls]	138	161	0.022
LRR [sensitive, ls]	138	161	0.45
LRR [sensitive, ls]	162	185	0.6
LRR [sensitive, ls]	162	185	12
LRR [sensitive, ls]	186	209	0.022
LRR [sensitive, ls]	186	209	0.45
LRR [sensitive, ls]	210	233	0.00079
LRR [sensitive, ls]	210	233	0.016
LRR [sensitive, ls]	243	266	0.0005
LRR [sensitive, ls]	243	266	0.01
LRR [sensitive, ls]	267	290	3.6e-05
LRR [sensitive, ls]	267	290	0.00074
LRR [sensitive, ls]	291	314	0.00087
LRR [sensitive, ls]	291	314	0.018
LRR [sensitive, ls]	315	339	1.2
LRR [sensitive, ls]	315	339	26
LRR [sensitive, ls]	340	363	1.9
LRR [sensitive, ls]	340	363	39
LRR [sensitive, ls]	364	387	0.35
LRR [sensitive, ls]	364	387	7.3
LRR [sensitive, ls]	412	435	0.06
LRR [sensitive, ls]	412	435	1.2
LRR [sensitive, ls]	436	460	1.1
LRR [sensitive, ls]	436	460	23
LRR [sensitive, ls]	462	485	0.042
LRR [sensitive, ls]	462	485	0.87
LRR [sensitive, ls]	486	510	0.025
LRR [sensitive, ls]	486	510	0.52
LRR [sensitive, ls]	511	534	1
LRR [sensitive, ls]	511	534	21
LRR [sensitive, ls]	535	555	0.32
LRR [sensitive, ls]	535	555	6.7
LRR [sensitive, ls]	588	611	0.0059
LRR [sensitive, ls]	588	611	0.12

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1	605	1e-65
FLS2 [A.thaliana]	23	641	2e-75
Xa21 [O. sativa]	24	331	3e-30
CLV2 [A. thaliana]	28	606	2e-56
Cf-9 [L. pimpinellifolium]	35	226	7e-12
Xa21 [O. sativa]	42	463	2e-39
Cf-9 [L. pimpinellifolium]	45	607	1e-61
FLS2 [A.thaliana]	58	625	7e-72
FLS2 [A.thaliana]	64	604	2e-64
FLS2 [A.thaliana]	64	309	8e-31
Cf-9 [L. pimpinellifolium]	65	284	5e-16
Cf-9 [L. pimpinellifolium]	68	604	3e-46
CLV2 [A. thaliana]	69	455	1e-35
CLV2 [A. thaliana]	72	287	4e-15
CLV2 [A. thaliana]	75	552	3e-50
FLS2 [A.thaliana]	90	608	1e-74
FLS2 [A.thaliana]	90	502	7e-69
Xa21 [O. sativa]	91	284	2e-21
CLV2 [A. thaliana]	242	632	3e-40
Xa21 [O. sativa]	259	608	2e-33
Xa21 [O. sativa]	416	624	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Type IV leader peptidase family	1585	1850	9.7e-143

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1592	1614	out -> in
putative TM domain	1683	1701	in -> out
putative TM domain	1705	1722	out -> in
putative TM domain	1729	1748	in -> out
putative TM domain	1758	1777	out -> in
putative TM domain	1790	1812	in -> out
putative TM domain	1827	1849	out -> in

Report for 4861.m00142

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)