Report for 4863.m00132

 > 4863.m00132, length: 2068, copies: 1 

MGLVGTVVDAAIGWMVQGILGSFFTGQMQVWSHEVGLAKDVEMLESEMKSVQMVLAAAEGRRIDNKPLSDSLDEL

KELFYDAEDVMDELDYYRLQQQIEGKCWNAAACINPEGSRVSSYSPSLFQRVSGKMNEIITWVIHGRKRKRDEDE

PTHSIMLPLEIKHDISQRINGIVNCLHIRNKSVQGVLQLEISRPIVVPKQTQSVARGARLTTSIPIERKVYGRDA

MLFVKPQRKEVLLIKAVLDLFGAASGLKVNLLKSSITPIHCNQQQLDMVSELLPCKVEEFPIIYLGLPLSMRKPT

KAELQPVLDKLASKVAGWKPKLLSPDGRLCLIKSVLMALPVHFLSVLQMPKWAVKEIERKCRGFLWKGQEDVSGG

HCLVAWKNVCAPVQNGGLGIRNLDAFGQALRLKWLAKSLEQKNRPWAKSGYKLGEDVEKIFNSAAEFCVGNGKDT

KFWTANWLNGGSIAWRWPVLSTYVGRSQLTVAQALTNNRWVRDLQGALSNEAMAQFFQLWDEVHTVELNLEEDTI

RWKLSSDGLFTVSSAYNLFFMAREICPFSELIWHIKAPSRVRFFLWLAAKGRCLTADNLGKRGWQHEDCCSLCQS

EAEDCLHLFVTCAFTRRVWRMMQGWIGINFLLPTENEPALADWWMKARMAFRTGYRSIFDSVFALTCWLLWKECN

ARVFEQKFRSIEQLVQDIKEEAIVWKTTGVFTTCNSEITSFLAYRVRAFAPICFRQHTVVESLLDKIRHKRFLLV

LDDIWEDKDRSRWDKLLAPLRFNEANGCMILATTQRTSVARMIGTMHKVEVNGLSDTEFWLLFKAWAFFGNENQE

HDPTMQSIGQHIAKALKGNPLAARSVGALLNRNVSYEHWRKVQYKWRYLLEQDDDILTILKFSYEFLPVHLQQCF

SYCSLFPKDHKLRGENLVRAWISQNFVECECHSKRLEETGKQYLDNLVDWGFLEEVESHYIMHDLMHDLAEKVSS

NECAIIDGLGSKNIPPNVRHLSIITTAYDEKRSCDFPSSEKFENILHKIVPLQKLRTLMFFGESSIMLLRSLHTL

CKESKESALNDCWCCNLTSLQELIFKVQDASNFNIGQLRSMNELVILGISQLENVKTKEEAKSARLIDKEHLQEL

SLSWDDKNMNSGPTAEKTRDGVFEGLEPHHNLKHLQLTRYSGATSPTWLASNVKSLQVLHLENCREWQIINSLEM

LPVLRKLKLIRMWNLMSVSIPSYLEELILVNTPKLEKCVGTYGSDLTSGLRVLVVKDCPCLNEFTLFHSDYFHTN

QKLWFPSLNKLTIGHYHRIISWKILPLEEMRALKELELMDVPVVEELSVPSLEKLVLIQMPSLQRCSGITTSSLP

VSTSQIHQKKLVSSLHKLTIHDCPSLIVSLPIPPSLISDLSVKGISVFPTINLSHGTFSIESNELNELDNRILPF

HNLKGLRSMYLQHCPNLSYVSSEVFSQLVALEHLSIEHCPNLFQPHSMSEPVHENSILNTDHLVLPSLRFLKISS

CGIVGRWLTQMLPHLLSLEYFLLSDCPQIKLLSINQPTETEATSSLASVETASSRDEQILKIPCNLLRSLKWLRI

WECADLEFSGVNRGFSGFTSLVMLQIRECPKLVSSLVTETNDTNVLLPQSLEHLDIGPLPANLQSYFPKGLPCLK

KLSLNSGEYLKSVQLHSCSGLEYLQISRCPHLSVLEGLQHLSSLRRLCIQMNPELSAAWDLKLFPLSLVELGVRK

VEGSFHSRSLSCLPSITKLEIQDSPELVSLQLGYCTSLEKLEITNCKSLASIKGIQSIRNLRYLKVLFAPSLPPY

LHGVSGIWSRLETLQISNAAVLSTPLCKQLTALRELMFLGKQGEGYDGETMVSLTEEQERALQLLTSLRVLAFSH

LQNLKSLPTNLQSLDCLDELYISVCPSILRLPQMGLPPSLRYLSLYRCSEELCVQCRMAETANLRVGIYSASAIP

RPGYASREKNGRGETCLGGSVGWTAWRAAPSGTWYRLLGGLAQSSTRDWTTARRMYRYWLVGRRPIPFTTHVTVS

HGIAFLCLHKYISISSAHMVYPALPVLIWQPACQPSIVKLLSI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	639	932	1.9e-14
NB-ARC [Pfam fs]	738	932	3.9e-38
LRR [Pfam ls]	1430	1454	1.5
LRR [Pfam ls]	1670	1692	2.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Reverse transcriptase (RNA-dependent DNA polymerase) [fs]	224	294	0.0011
LRR [sensitive, ls]	1223	1251	6.1
LRR [sensitive, ls]	1223	1251	130
LRR [sensitive, ls]	1364	1391	1.9
LRR [sensitive, ls]	1364	1391	40
LRR [sensitive, ls]	1430	1454	0.071
LRR [sensitive, ls]	1430	1454	1.5
LRR [sensitive, ls]	1492	1519	4.1
LRR [sensitive, ls]	1492	1519	85
LRR [sensitive, ls]	1569	1594	4.3
LRR [sensitive, ls]	1569	1594	90
LRR [sensitive, ls]	1670	1692	0.13
LRR [sensitive, ls]	1670	1692	2.7
LRR [sensitive, ls]	1762	1787	1.2
LRR [sensitive, ls]	1762	1787	24
LRR [sensitive, ls]	1810	1831	3
LRR [sensitive, ls]	1810	1831	61
LRR [sensitive, ls]	1867	1890	1.4
LRR [sensitive, ls]	1867	1890	29
LRR [sensitive, ls]	1891	1912	6.8
LRR [sensitive, ls]	1891	1912	140

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	8	100	6e-16
Pib [Oryza sativa].	710	1038	7e-19
Xa1 [Oryza sativa]	733	1923	1e-107
RPM1 [A. thaliana]	734	977	3e-24
Mla1 [Hordeum vulgare].	734	998	2e-16
Pi-ta [Oryza sativa]	734	1074	2e-12
I2 [L. esculentum]	738	1685	4e-59
RPS2 [A. thaliana]	742	1374	2e-21
Xa1 [Oryza sativa]	1201	1941	1e-55

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	39	61

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4863.m00132

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)