Report for 4890.m00176

 > 4890.m00176, length: 1072, copies: 2 

MAVVAGAMTALIAKLTTLLMDQYKLQNSARGDIIFIKAELESIQAALEKLFEVQVTDRQVKIWERDVREQSYDME

DIIDNFMVHVETHLLAKPHELKGFMKGSLSLLRRAMVRYRVATDIKRIRRLVNETSARRDRYKVGTIVAAAKTET

AIDPRLIGIYGEATKLIGISGPKEELTKLLMDSKGNSKNKLKVISIVGVGGLGKTTLANVIYQQLRGQFECHAFV

SVSLKPDLKKVLSSILRQFSEQGYAWTETWCAQEIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIENDRGS

RIITTSRVLDAATPCSSEVDHTVYKLQPLSSDNSKKLFYKRIFYCEDGCPLELKDISEKTLRKCEGVPLAIITIG

SLLAMRPQNLYQWDRVHNLIGSGLEKSHHVENMRHILSISYYDLPAHLRACFLYLSIYPEDYNIQKDQLIRRWIS

EGFILGEDMDTLHEGGKYFNELINRSMIQPAYIDSHGRVHACRVHDMVLDLITSLSNETNFVTSLGGQQPTYHPN

RARRLCLQNSIYDHTIRQEKMKWPRVRSLIVFPHATNLLPSLSRFRILRVLDLEGCQDLKNHQIEGISDLFHLRS

LVLKDTNIGSLPKKIGNLSCLHTLDIRHTIITELPSTVVHLRRLVRLLIDASVKLPDGIGKMECLQEISLVGISK

SPNFLKELGSLTELRILQISESTGAWHDSYENTLIDSLCNLHKICDLYIHGCKLSTEFISNIRCSPRYLRYLSCG

QLSILPRWINSSLLSLSTIDLILNVLRQDDLRSLGALQSLCCLRLNVFKIEPERLVVGTEHAKFHWLAEFSFTTN

AMGLIFSQYSMPRLENLELAFNVRETKYFDIGLEHLSSLKDVTARIDCRDSSIFEVQNADAAIRRIAYMNSNQPK

VHVIRHYEHMLMDEVKIQKETEEEKEILENRIGPWGGNGGVTCDIKVAPKRLESITICSGIIIDALAFSYLDKDG

ERHTTSLWGGLGGSVQLIDLDEREFLMEVIGTVGPFNVLSEAITSLTLVTNVRSYGPFGQPQGTPFRTPRKKNSC

IVGFFGRSGTYLDAVGVYFHPM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	150	459	1.1e-53
NB-ARC [Pfam fs]	166	459	1.1e-54
LRR [Pfam ls]	597	619	2
LRR [Pfam ls]	620	642	6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	572	596	3.4
LRR [sensitive, ls]	572	596	70
LRR [sensitive, ls]	597	619	0.095
LRR [sensitive, ls]	597	619	2
LRR [sensitive, ls]	620	642	0.29
LRR [sensitive, ls]	620	642	6
LRR [sensitive, ls]	718	741	4.5
LRR [sensitive, ls]	718	741	94
LRR [sensitive, ls]	838	865	4.6
LRR [sensitive, ls]	838	865	96

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	903	1e-153
Pi-ta [Oryza sativa]	8	692	1e-78
RPM1 [A. thaliana]	12	867	1e-60
I2 [L. esculentum]	36	717	4e-43
Pib [Oryza sativa].	52	357	1e-16
N [N. glutinosa]	79	756	8e-12
Xa1 [Oryza sativa]	120	696	9e-34
M [L. usitatissimum]	162	433	1e-12
Pib [Oryza sativa].	162	644	1e-59
RPS2 [A. thaliana]	193	629	9e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Jacalin-like lectin domain	940	1071	5.7e-26

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4890.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)