Report for 4895.m00219

 > 4895.m00219, length: 1608, copies: 2 

MDKAAVVPLPITGGVNDDRTAALQQWASTVGFGGEVGRLVEAHRRLDSVLAETQGKEIRNKELQRRLREASHDAA

RARDLLGELEYYRIREEVERDDHDKNDLHFETEEVLVSPQALALNRKPPAILEAQFTQLLHDNANGNLLLSMPQR

DVEFFNNDAAKDDKDTTESSLSNTDSSASALQVTTYIASSSSPVPYLETLNKCISNEISKYTEKCYRIAKQVSEA

LELESLDYLYAHKYQRTRTDHRETSPCQSEPKVHGRDQQRDLIISKLTSEECARKKLSILAIIGDGGIGKTTLAK

LVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWE

DSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEK

IGQQIVDKLKGNPLAAKTVSKVLRRSFDVDYWRRILHTGEWKYKNDENDIMPALMISYKYLPAHLQSCFSYCAVF

PKYHRYEKERLIDMWIAQDLLCSADIHTRPEDIGNEYFDDLLDWGFFEKQFEHSTLLIMHDLIHDLAQKVSSDES

FTIEGNEPRNAPPCVRHVSVITEWEYKTKLNGTVYPNDSFLQEFSNSFRELQQRSLSTLMLFGPHDLDFADTFRQ

ELNEVRSIRVLKLEMVFFDLDSLIGNISAFVNLRYLELGCFYKGPRLELPEAICRLYHLKVLDIKKNWGPSTSLP

REMSKLVNLRHFIAEKELHAKIAGIGKMVSLQELKAFDVKKDHEFSISQLRGLNQLRGSISISSLYNAGHEEASQ

ARLCDKDNLTCLHLSWLTLSRNRVARRTLPILEDLKPHSGLKNLQVVGYRHSLPSWLCSTVHLTSLRSLHLDRCI

RWQTIPHPQQLPLLQELHLIQLPRVYKIEIGPLKVLEIRWLQNLRQCILLDKEQSYATLQILEVEGCPKLDEFLL

QIFMSSGVQSTYQFLGIHRLKIHNDFLRASIPLLLLNSLSDIDLCGEHSKFTRFRLKPFGTSDGLSLQIKGDRYI

QKIEERLFTLEKLKDLRELEIRDYQSVIFQRQFWEGFEQLTSLKKFRVIKCPEIFSTNFELFLPPSVEELELSGC

NITLIQLSQLLVNLHLLKSFKLTNCQGVTSLPVGLFTDEQNTMSEGSWHIPPRCFTSLESLQISFTTAPSDANSI

MHFTSKKGLGRFVSLKKIVIENCPTLLSRALSGGASHISPSSLDKLCMTGIQDSTLQFSDVSSIADLDVSGCPKL

ACLDLSSCTALEKLCVIDCRLLQSIEGLPSCSALRDLKIRNCALLPSLSASLHTLKTLSIENNTNLASLELKSCT

SLQKLCIKDCPALTSWEGLKSLVSLEILKVEASPGFITRWISAAAEVNIEEKNFSLPLEKLNVDNIDVLCVPICS

QLTSLKILSIEEDRHDPDGHVEFLTDNHVKGLSFLTCLRFLDLENLEQLRSLPAELGSLASLQRLHVGNCGHITS

LPVGGLPASLKDMELYNCSKELNVLCRDMLRLRRNLHLWVDGDEEDFFSQNCSDEEISELMFAYRIAFTPGSFLE

EQNNTRTPSIFDEGSKRNKISKYKRRKKATAYR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	242	551	8.2e-71
NB-ARC [Pfam ls]	242	551	2.3e-71
LRR [Pfam ls]	1116	1140	4.1
LRR [Pfam ls]	1329	1353	6.3
LRR [Pfam ls]	1462	1485	4
LRR [Pfam ls]	1486	1507	0.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	838	861	0.49
LRR [sensitive, ls]	838	861	13
LRR [sensitive, ls]	890	912	1.1
LRR [sensitive, ls]	890	912	29
LRR [sensitive, ls]	1116	1140	0.16
LRR [sensitive, ls]	1116	1140	4.1
LRR [sensitive, ls]	1141	1165	2.1
LRR [sensitive, ls]	1141	1165	56
LRR [sensitive, ls]	1263	1287	1.8
LRR [sensitive, ls]	1263	1287	47
LRR [sensitive, ls]	1329	1353	0.24
LRR [sensitive, ls]	1329	1353	6.3
LRR [sensitive, ls]	1462	1485	0.15
LRR [sensitive, ls]	1462	1485	4
LRR [sensitive, ls]	1486	1507	0.03
LRR [sensitive, ls]	1486	1507	0.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	23	1518	1e-147
I2 [L. esculentum]	161	1364	4e-98
RPS2 [A. thaliana]	216	976	2e-27
Pib [Oryza sativa].	224	767	1e-30
RPM1 [A. thaliana]	248	1002	1e-41
Mla1 [Hordeum vulgare].	258	807	8e-26
Pi-ta [Oryza sativa]	258	738	1e-18
RPP5 [A. thaliana]	707	1340	1e-10
I2 [L. esculentum]	911	1518	3e-14
Xa1 [Oryza sativa]	911	1529	1e-37
Xa1 [Oryza sativa]	1215	1538	1e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	57	81

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4895.m00219

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)