Report for 4895.m00221

 > 4895.m00221, length: 926, copies: 3 

MDIALASAAATWLINKLLDRLSDYAIKKLLGSEGLDAEASSLRDALRRATLVLGAVPAGAAAGVRIGNDQLLPQI

DLVQRLATDLARHLDELEYYDVKKKVKKNQKSSNPLSKMNLPLTQAGQSKPKYNRTDIKQIRDTVGYLHSICDDV

HKALLLDKLDAIKQAAQDASTDKRETVDNFTENPRNKVFPREEMKDIIELINSAASSDQELLVVPIVGAGGVGKT

TLARLVYHDPEVKDKFDIMLWIYVSANFDEVKLTQGILEQIPECEFKSAKNLTVLQRGINKYLTKRFLLVLDDMW

EESEGRWDKLLAPLRSAQAKGNVLLVTTRKLSVARITSNTEAHIDLDGMKKDDFWLFFKRCIFGDENYQGQRKLQ

NIAKKIATRLNGNPLAAKSVGTLLRRNINEDYWTRILDSNEWKLQESIDDIIPALKLSYNQLPYRLQLLFSYCAM

FPKGYNFDKGQLICTWIALGFVMNERKKLEDEGSDCFDDLVDRSFFQKYGVSQYYTVHDLMHDVAQEVSINKCLI

IDGSDLRTVPSSICHLSIWTEPVYNEQSIERNDNFEEKLDAVQDNVLGSLECLILAGVYDENYSAKFVKTLERVR

YVRMLQLTAMPFNSDILLSSIKKLIHLRYLELRCTSDKPKSLPEAICKLYHLQVLDVQHWSGLNDLPKDMSNLVN

LRHLFVPGSGSLHSKISRVGELKFLQELKEFQVQEADGFEISQLGNINEIRGSLSILGLETVKKKGDATRARLKD

KKHLRTLSLTWGSASGSTTTVQKEVMEGLKPHENLSHLLVYNYSGATPSWLLGDSFSLGNLESLHLQDCAAVKIL

PPFEEMPFLKKLSLVCMPCLKSIRIDFNSADEEDELELSEIEISKCLALTSIRLHSCKALTMLSINDCEALGSLE

GLSFSEKLKQCVVQGCPKLPSGFIAN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	171	477	4.3e-61
NB-ARC [Pfam ls]	171	477	2.4e-61
LRR [Pfam ls]	810	832	0.85

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	651	674	3
LRR [sensitive, ls]	651	674	79
LRR [sensitive, ls]	675	698	3.8
LRR [sensitive, ls]	675	698	100
LRR [sensitive, ls]	810	832	0.032
LRR [sensitive, ls]	810	832	0.85
LRR [sensitive, ls]	862	886	0.51
LRR [sensitive, ls]	862	886	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	75	726	1e-30
I2 [L. esculentum]	80	917	2e-90
RPS2 [A. thaliana]	144	899	7e-23
Xa1 [Oryza sativa]	144	909	1e-127
Pib [Oryza sativa].	163	923	1e-30
RPM1 [A. thaliana]	199	760	5e-36
Pi-ta [Oryza sativa]	199	656	4e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	550	571

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4895.m00221

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)