Report for 4915.m00060

 > 4915.m00060, length: 1289, copies: 1 

MAGVAAVFAGKAIATSVITYVINKAFDYLKDNKEAGGLKPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWL

WQLRDAVELAKDALDELEYYKLEREAKKIQAGSKVSGSLHQYKGKIVQRFNHTFNTGSLKRLKNAVKALADVASG

VERFIQVLNQFGNKVNFKQEVEFKNLRETSSLPHSLVLGREEESNIVVQWLTKRENSASEQIVGNIPIFCIVGLG

GIGKTTLAQVICNDNKVKDYFDLFVWVCVSHIFDVETLTRKILQGVTRTEIGMIGLDALHKALQEKLSSRTFLLV

LDDVWNDESLRGWETLVSPLRYGKTGSKILLTTRMESVANLAARAMQGECQSLSLSGLKETELLLLLERHAFFGV

NPDDYRNLQHISKKMVSKLSGSPLAAKVLGGLLNNKRDSNTWNRILASSVHNIQQGKEGIMTVLKLSYQHLPTHL

QSCFRYCSLFHKDYEFTKKELVYLWMGSGLIQQSVDGMTPEDVGMGYLDALTRKSFFEIKSRPRSSRDIKCRLFE

EYYEERFVVHDLLHELARSASVNECARVSISSEKIPNTIRHLCLDVISLTVVEQISQSKKLRTLIMHFQEQDQAE

QEHMLKKVLAVTKSLRVLSLTANYPFKLPDAVGDLVHLRYLSLSLMWGEGNTTHSCWFPQVVYNLYHLQTMKFNN

PRPAVPMEGQMEGMCKLVNLRHLHLTLVIRPMIPFIGKLTSLHELYGFSIQQKVGYTIVELKNLRDIHHLHVSGL

ENVCNIEEAAEIMLDQKEHLSAVTLVWAPGSSDSCDPSKADAILDKLQPHSNTSKLQLEGYPGSRPPFWLQDLIL

INLTYIYLRDCQSMQCLPYLGHLPSLQYLYIVNMKSVECVDSSFYGSGEKPSGLQSLKVLEIENMPVCTEWVGLE

GENLFPRLETLAVRDCQELRRLPTLPTSIRQIEIDHAGLQAMPTFFVSSDGSSSSMFNLSLSKLMISNCPYITTL

WHGCSLYALEELSIQQCASLSCLPEDSFSSCSSLKTLEIVKCPNLIARQIMLPHTMRTITFGLCANAELALLDSL

TGLKYLKRIFLDGCAMSKLPLQLFAGLIGLTHMVLNACSIAHLPTVEAFARLINLEYLFIWDCKELVSLIGIQGL

ASLMSLTIASCDKLVEDSSILSPEDADSSGLSLNLSELDIDHPSILLREPLRSVTTIKRLQISGGPNLALLPEEY

LLHNCHALEELVLTNASHLQCLPQAVTTLTSLQSMHINNAVKIQTLPDMPASLTSLHIYGCSSELKKRCQKHVGH

DWVKIAHISDADIR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	170	486	2.9e-57
NB-ARC [Pfam ls]	170	486	2.4e-57
LRR [Pfam ls]	827	849	3.3
LRR [Pfam ls]	983	1007	0.66

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	614	642	4.4
LRR [sensitive, ls]	614	642	92
LRR [sensitive, ls]	827	849	0.16
LRR [sensitive, ls]	827	849	3.3
LRR [sensitive, ls]	928	949	4.4
LRR [sensitive, ls]	928	949	92
LRR [sensitive, ls]	983	1007	0.032
LRR [sensitive, ls]	983	1007	0.66
LRR [sensitive, ls]	1055	1078	0.44
LRR [sensitive, ls]	1055	1078	9.2
LRR [sensitive, ls]	1104	1126	0.75
LRR [sensitive, ls]	1104	1126	16
LRR [sensitive, ls]	1207	1230	1.6
LRR [sensitive, ls]	1207	1230	34
LRR [sensitive, ls]	1231	1254	1.1
LRR [sensitive, ls]	1231	1254	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	10	1283	1e-118
Xa1 [Oryza sativa]	175	1269	4e-95
M [L. usitatissimum]	177	475	5e-13
RPS2 [A. thaliana]	182	923	4e-24
Pi-ta [Oryza sativa]	184	641	1e-21
Pib [Oryza sativa].	185	914	3e-30
N [N. glutinosa]	213	464	3e-11
L6 [L. usitatissimum]	215	475	2e-12
RPM1 [A. thaliana]	218	923	4e-42
Mla1 [Hordeum vulgare].	221	764	1e-27
Xa1 [Oryza sativa]	879	1270	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4915.m00060

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)