Report for 4922.m00210

 > 4922.m00210, length: 841, copies: 2 

MDAPVLSSSLALGAMSPLLGKLDELLASTEHTAPSIQQIRANLGITSTRLVELSMLQDPPLVAKYWMKDARELSY

DMEDCLDLDQVAGGGEEADWIDRIAGFRSRVEEANRRYERYNLDSILGSSTNIPIDHRLKPAVGKPAMEHVGMEG

PMDELRRWLTDEAQELKVVSIVGVGGVGKSTFAQKLWRKLGGQFDCRAFVHTAKKPDMRRILRSILSQVRPRQQP

EVCEVHNLLEDLRKHLLDKRYFIIVEDLWDTSVWDVVSRAFPKGNCGSRIVTTTKFEEVALTSCGYHSKYVFKIK

PLSEDLSKELIVRRVFVSGKGCPQQCSAILDEITNKCGGLPLALNIIASLLSCQHEVLEHWKHARDFLCNSLRTN

PTFDEILKQVVNLCYNSLPHCLKTCLLYFSIYPENYTVMKEDLVKQWAAEGFLCATKGEEIMAVAVSCFDRLVNL

GLIQPIDINYNDKVVHYAVNNMVLDIITYKSIEENFITVMDKDCYQMSIELSDKVRRLSLHFGSATYATIPAGIG

LSQVRSLTFIGLFNCLPSIVKFKLVRVVILHFLGDHGNLSLNLRKLGELSQLKYLQIKCNVTVELPYQMQGLKHL

EALEIRARTVSIPSDIFHLPMLFHLLLRADRNLSPRIAKSFCLEPNPSGKISSLDNLNVLSSPPIFLQTFEVLPP

IGVYSRLPEWIQQLRKLRILKIAIRQLMRNDIDILSGLPVLTAVSLHIRQSMEEIIVFHRESFPALDCLKLSCSV

LYLTFQEEAMPNLRRLKLGFNAHRREFFYVNMLSGIEHLKTLQEVVGQIGLGFGAGESEWAAAEYAFKNAFSRHS

NLTSFNIRRVGGVDEE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	133	433	1.2e-48
NB-ARC [Pfam fs]	143	433	1.1e-49

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	3	824	1e-147
Mla1 [Hordeum vulgare].	10	700	5e-79
Pib [Oryza sativa].	50	305	1e-12
RPS2 [A. thaliana]	98	433	2e-17
Pib [Oryza sativa].	133	625	1e-41
RPM1 [A. thaliana]	146	626	7e-35
I2 [L. esculentum]	153	667	2e-26
Xa1 [Oryza sativa]	159	626	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	97	117

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4922.m00210

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)