Report for 4926.m00064

 > 4926.m00064, length: 915, copies: 1 

MHDLVHDFARSILFDAVLDSGKKINIGVSSCRYGMLRDCSKPLELVTPSPAKIRALHFLGCGKIELHGVAFSSAS

CLRVLDLSGCSILRLPASIGQLKQLRYLNAPGMKNRMIPKCITKLSKLNFLSLCRSRAISALPESIGEIEGLMHL

DLSGCSRLKELPKSFGKLRRLVHLNLSNCSRVKDVSEYICGLTNLEYLNLSVCRKIGFLPRTLGSLTELKYLNLS

GCFGIKELPKSFQQLKNLVHLDLSCCNCVKDLSEALDGLAKLQYLNLSYCHHYGNQFRLRGLPEVIGNLTSLRHL

HLSGFLDNIFGNQSGVMDKLLEIGYLNLSTFQGNIFQQLPPGQSHSFIECIGALSNLEHLNLSNNVSLYSVPESL

GNLRKLHTLDLTGCIGLLWLPESISKIQSLKYVLMKDLLRLKSTLSCFNNGPILLPNFVVQAVDKKSSNLGQLLD

ANPAELDISSLENVKSTKEAKGIKLSGKRNIVKLKFDWTIGTKRYVEDMEVLRELVPPSTVKYFELRGYHSTSFP

TWLMGIAHCLPNLVKIKIVDLSKCSILPLGQLPNLKQLVLGRMKSITKIDADFCGGARAFPQLKTFDIYSMERLQ

EWNTTYSCGEDGVTEFMFPNLQWLSISDCPNLVVKPLPPRVTWWKIEGGESVISSWGGSVHTGTSSSSCSVTNLV

VKFCTLPLSQWSLLHHLPALRHLTIHWCADLTSSPEIIQDLHSLKSLSLDGNEQAELPDWLGDLPSLQELKITMY

PALTELQEKIRQLMSLQSLTLSSCQMLTSLGEWFGSLTSLQELHISHCQRLNSFPEGMQYLTSLLSLHLSYCESI

SALPEWLGNLTSLKTLQIWECRGIKSLPESIEQLTMLEHLEISGCPELKQCVFGSAGRLEGVFTNLKLALQIQEH

LGAICAAMSLPASQK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	76	98	0.018
LRR [Pfam ls]	146	169	0.14
LRR [Pfam ls]	170	193	0.66
LRR [Pfam ls]	194	217	1.3
LRR [Pfam ls]	218	241	0.0099
LRR [Pfam ls]	242	265	0.43
LRR [Pfam ls]	356	379	0.01
LRR [Pfam ls]	765	788	0.15
LRR [Pfam ls]	789	812	0.4
LRR [Pfam ls]	813	836	0.16
LRR [Pfam ls]	837	860	5.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	76	98	0.0017
LRR [sensitive, ls]	76	98	0.018
LRR [sensitive, ls]	146	169	0.012
LRR [sensitive, ls]	146	169	0.14
LRR [sensitive, ls]	170	193	0.06
LRR [sensitive, ls]	170	193	0.66
LRR [sensitive, ls]	194	217	0.12
LRR [sensitive, ls]	194	217	1.3
LRR [sensitive, ls]	218	241	0.0009
LRR [sensitive, ls]	218	241	0.0099
LRR [sensitive, ls]	242	265	0.039
LRR [sensitive, ls]	242	265	0.43
LRR [sensitive, ls]	266	295	7.2
LRR [sensitive, ls]	266	295	79
LRR [sensitive, ls]	356	379	0.00096
LRR [sensitive, ls]	356	379	0.01
LRR [sensitive, ls]	380	406	1.6
LRR [sensitive, ls]	380	406	18
LRR [sensitive, ls]	540	564	1.5
LRR [sensitive, ls]	540	564	16
LRR [sensitive, ls]	620	642	4
LRR [sensitive, ls]	620	642	44
LRR [sensitive, ls]	694	717	2
LRR [sensitive, ls]	694	717	22
LRR [sensitive, ls]	718	740	3.3
LRR [sensitive, ls]	718	740	37
LRR [sensitive, ls]	765	788	0.014
LRR [sensitive, ls]	765	788	0.15
LRR [sensitive, ls]	789	812	0.036
LRR [sensitive, ls]	789	812	0.4
LRR [sensitive, ls]	813	836	0.015
LRR [sensitive, ls]	813	836	0.16
LRR [sensitive, ls]	837	860	0.49
LRR [sensitive, ls]	837	860	5.4
LRR [sensitive, ls]	861	892	1.2
LRR [sensitive, ls]	861	892	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
N [N. glutinosa]	1	405	2e-17
RPP5 [A. thaliana]	53	581	3e-12
FLS2 [A.thaliana]	65	773	3e-12
Xa21 [O. sativa]	70	386	2e-12
Xa1 [Oryza sativa]	72	862	3e-12
FLS2 [A.thaliana]	77	388	1e-13
FLS2 [A.thaliana]	113	387	3e-14
CLV2 [A. thaliana]	116	487	1e-11
FLS2 [A.thaliana]	126	855	5e-11
CLV2 [A. thaliana]	147	413	8e-12
Xa1 [Oryza sativa]	147	873	4e-11
I2 [L. esculentum]	157	881	1e-11
Xa1 [Oryza sativa]	344	864	2e-19
RPP5 [A. thaliana]	356	874	2e-13
I2 [L. esculentum]	371	874	5e-28
N [N. glutinosa]	691	875	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4926.m00064

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)