Report for 4930.m00058

 > 4930.m00058, length: 1010, copies: 1 

MNREDGANARNMQRLASWTKYGSLLPKLVEVLKEEYDLHKGVRKKIKHLSQELESMNAVLLKVGEVPPDQLDELV

KLWAGDVRELSYDMEDVVDAFLVHIDGPEPLDTHMLRRFRKKMANFFNKCKHHHKIAGAIQDVNKKVEEVAARRD

RYMVDNIIAKVTGPVTIDPRLQALYKKTTELVGIEKQSEKLVKILSLGDDVHASDEKMKIVSIVGFGGLGKTTLS

KAVYDKHKLAFDCGAFVPVGRDPDMKKVLRDILIDFDYMNPNVMILDERQLINELRKLIQNKSILFMLSMRMVMN

NCLRKSFGYDILGYKAKCIQRFLFVIDDIWDKKSWELIRCALQHSNCGGRVVVTTRIFEVATHIGDIYKMQPLSR

DDSEILLYSRINDGEDRFLDSLSTEACDKILKKCGGVPLAIITIASLLASKSGEDWSNVYNSIGFGERGNDIVEN

TRRILSFSYYDLPSHLKACMLYLSLFREEYGIEKNLLIWKWIAEGFIQNEHATGIGLFELGEGYFNELINRSMIQ

PMELEDNGYVYGCRVHDMVLDLVCSLSSEEKFATILDSDDQQKQLMVGSNARRLAVHGRSVEEHNHPQLVNVGLE

KVRSFSATQCGDINVVTSYFRVLRVLTLEDCSVTGEACGKHRLEHVGNLRHLRYLGIWNTRIDEFPKEVGDLKFL

QTLNLSGTGIQQLPEAVGLLKQLLCLRINDSIAVPAGLIGNLTSLQELKIWPVDDVSTRQFVKELGKLRELRILR

CTIHISDEGMERDLLESLANLHKIRTLCILGSALPSGITREACFVTPQRLGQLCLECFKFSGLPVWINSSLLLNL

THLDVSVHVVQEQDMETLGRLPELCYLKLCSDYTRLVSIRNGDLQRYLFRKLRFFVSPFLFARFDDLHGRENDGG

ICIAVAPSIMMPSLESLVFCVYVRFLKDMVEMQPGFDNLHMQLGFEKVASSSLQRVTATIQCEDATAAAEVEEAK

TALAHAADLHPNRPTLTTQMVNKHKMLSSDRELRV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	166	293	1.3e-15
NB-ARC [Pfam ls]	166	502	1.8e-42
NB-ARC [Pfam fs]	321	378	8.3e-11
NB-ARC [Pfam fs]	404	502	3.9e-26
LRR [Pfam ls]	674	696	0.092

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	622	650	2.7
LRR [sensitive, ls]	622	650	30
LRR [sensitive, ls]	651	673	0.9
LRR [sensitive, ls]	651	673	9.9
LRR [sensitive, ls]	674	696	0.0084
LRR [sensitive, ls]	674	696	0.092

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	23	995	1e-161
RPM1 [A. thaliana]	27	858	2e-55
Pi-ta [Oryza sativa]	38	786	7e-59
Pib [Oryza sativa].	73	397	2e-11
I2 [L. esculentum]	179	772	4e-32
Pib [Oryza sativa].	179	698	9e-48
Xa1 [Oryza sativa]	210	723	4e-20
RPS2 [A. thaliana]	314	708	1e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4930.m00058

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)