Report for 4931.m00067

 > 4931.m00067, length: 833, copies: 1 

MAADLGKQIFSQIGHNIVKNALIHQWVSLGFIEESNIFSTRQLSERYIKQLLGLSFLQLSKSPLTAGLYHEDVTL

FTMHDLVHDIARLVMVDEILLDNKQDNSGGISYHYALLSNCFKPLESSTGYLAKIRALCFTNCREFRLSDGAFSS

GKSLRVLDLSDCSIQKLPDYIGQLKQLSSLLGIPQALHGLAKLEYLNLSLQNGEIHQDKLPLIGLPEVIGSLTNL

KYLNLARCMDYVFGSPSTDQTDSFIGSISTFSNLEHLDLSKNKILCSIPESIGSLRMLHTLNLSGSSMLARLPEC

LTKKESLKVLNVMGCKLFEAKLPQSNFLFTLPHFVVHTGEGQSSSNLPLLEHAILDEFLELSRLENVKSTQEARS

IKLIEKESINSLNLEWTGGADRFVEDMNVLGEMVPPNTLKKFVIEGYRASAFHPGITLWDLPKCNSLPPFGQLPN

LGEITLGRMHGIRRIDKGIYGGPGAFPRLIGFHLWAMHSLEELDFRDDLQTQVMFPMLQDMEISDCPKVRLKSSP

PNAGNWTIILSDNVLSSRVERCHTSASSSSAVACLSDHLCKLVPMHQWVLLCHLPPLLHLHIDGCGDLSSASPEI

IRALSSLKSLILEDNEKAEGLPRWLGELTCLQGLSLVGFQKLKDLEGNMRQLTSLQSLNLDGCSIMESLPQWLEL

TSLENLRLRYRKNLNDLQQTMCDNLTSLQPLTLEKCVRTPSLPERMGNLNSLKELKDDQAEQPRLLGGITCVQHL

SLEGFPDLLDLQGSMRQLTSLTSLHLYQCDSMTSLPQWLGELASLKWLTIKDCGKLNDLQETMQHHLPTVTRIGS

LPQNSLSA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	153	175	0.0013
LRR [Pfam ls]	258	281	0.016
LRR [Pfam ls]	654	676	2
LRR [Pfam ls]	770	793	3.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	53	77	7.5
LRR [sensitive, ls]	53	77	83
LRR [sensitive, ls]	153	175	0.00012
LRR [sensitive, ls]	153	175	0.0013
LRR [sensitive, ls]	258	281	0.0014
LRR [sensitive, ls]	258	281	0.016
LRR [sensitive, ls]	282	302	1.8
LRR [sensitive, ls]	282	302	19
LRR [sensitive, ls]	581	605	2.3
LRR [sensitive, ls]	581	605	25
LRR [sensitive, ls]	654	676	0.18
LRR [sensitive, ls]	654	676	2
LRR [sensitive, ls]	677	701	2.5
LRR [sensitive, ls]	677	701	27
LRR [sensitive, ls]	770	793	0.29
LRR [sensitive, ls]	770	793	3.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	19	812	9e-30
FLS2 [A.thaliana]	154	800	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	674	694

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4931.m00067

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)