Report for 4952.m00270

 > 4952.m00270, length: 588, copies: 1 

MDGAAVSVATGVMGSLLAKLSALLGEERGLLKGVKGDIRFLRDELSTMNVFLMNMASVEENMDVQVKDWRNKVRE

LSYDIEDCIDLFMHKLNRGDDKVNIVLKMAKKIRMLWSRHQIANQIQELKARVKEESDRRLRYYFSECNAHVDGT

KIDPRLPALYVEEEKLVGIHGPMEEIIELLMKEDGSGQKLKVVSIVGFGGLGKTTLANQVYNKIKDQFDCSAFIS

VSQSPNIKKILFDMLKDVTSRDNSDDDKQIKVVGVKGDKSDDERQLIGKLRVFLENKRYFIIVDDIWSASAWEHV

RLALPENSLCSRIITTTRNVNVAKSCCSGFQGSVYNIQPLNEQDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKC

HGFPLAIICLASLLASKSDTKDQWEQVHNSLSSAFSSQGMSDILLLSYYDLPYHLKTCLLYLSVFPEDYKIDRDE

LIWRWIAEGFITEVKGQTLDQVGGSYFNELINRNMIQPIDIKYDGTANACRVHDMVLNLIISISSEENFLTVVDE

QGYKYLGNKIRRLSFQSNSVENDVNVVQKIMDNLSQDQQIGQPRNLIYRGLESEIHISVCHKN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	151	466	9.4e-68
NB-ARC [Pfam ls]	151	466	2.6e-68

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	3	540	1e-47
Pi-ta [Oryza sativa]	5	547	4e-75
Mla1 [Hordeum vulgare].	6	555	1e-110
RPM1 [A. thaliana]	17	525	3e-62
Pib [Oryza sativa].	48	368	5e-15
Pib [Oryza sativa].	50	543	5e-59
Xa1 [Oryza sativa]	112	544	4e-30
L6 [L. usitatissimum]	159	440	4e-14
M [L. usitatissimum]	161	440	3e-15
RPS2 [A. thaliana]	164	517	4e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4952.m00270

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)