Report for 4969.m00158

 > 4969.m00158, length: 508, copies: 1 

MAVRSEAVGFGKPWPQEEQIRWSRPPGDWIRRSYGEKARRRRGNGEEESAPPGRELGGSKEERAPLWTKRGGAAM

SPGETLEERSEEHLKNLTSIDLSYNNLTGDFPTVLYACSALELLDLSNNQLSGRLPDDIDKLSSDMQHLNLSNSI

VPISVIAGGVVIFAVGCVVASCRCRARNDDMTPIVLSDKMEDHLVHNAVDVNRISSTGTTTGDPLYRLGVINDSS

DTYRRLTVKKMQNETRSVDAELENRRQTEETTLGMIVHPNIIILLGYIRRNEMILILYEDMENGSLDKWIHHNTQ

AGERRLRPPLGWRKRLAIVIDVAGAILYMHHGCRRPIIHGDIKPANILLDGNFKAKISGFSYARINLAGRNTLLG

NVRLHAGAFGYFAPEYADTEVSEKVDVYSFGVVLLEIVTGKVVNDQHGHLTTWAKAYLNTWARQGYDDKLFTDDV

LDNDIASDAARYLKEMKAVFKLGVECTMMDPQRRPSMQTVLRRLRQCARWWRRFPCFV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	91	114	0.18
LRR [Pfam ls]	115	138	0.0075
Ser/Thr pkinase [Pfam ls]	216	501	8.4e-13
Ser/Thr pkinase [Pfam fs]	263	415	2.4e-19

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	91	114	0.0088
LRR [sensitive, ls]	91	114	0.18
LRR [sensitive, ls]	115	138	0.00036
LRR [sensitive, ls]	115	138	0.0075

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	88	494	6e-26
Pto [L. esculentum]	219	499	2e-21
Rpg1 [Hordeum vulgare]	226	494	2e-15
Rpg1 [Hordeum vulgare]	226	416	5e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	150	172	out -> in

Report for 4969.m00158

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)