Report for 4971.m00139

 > 4971.m00139, length: 932, copies: 2 

MAEIAVLFVIKKIGIAVAGDTLKLAIPLFAKKTELKKVELVTALPVNMRQIKKELEIINAFLKELGMNGYKGEVV

ETWIRQVRRLAHDMEDVVDEFMYVVGKNKHKKSWACVKKIIKKPKPLFSLDEIATKADMINTELVELSKRLDRWT

RPLSSGIYVPPTNYNSEQQLYLPGYDYSINDNELVGIDKNRQTLIESLRLEDCSLRIIAVWGMGGLGKSTLVNDI

YKNEAIVSNFNCHAWLCISQSSKMHDIWQNMLKELCGEDNRGVDAENMNNRELRLELAKILRQKRYLIILDDVWL

AADLLKIREVLVDNGLGSRVIITTRIEEVASIAEDGCKIRLEPLNNHDAWLLFCRKAFPKTENHMCPPELHQCGM

DIVNKCGGLPLALVTIGSLLSLKPRNKKEWRLFYNQLISEVHNNENLNRVEKILNLSYKHLPNYLKNCFLYCAMF

PEDYIIQRKRLIRLWIAEGFIEQKGTCSLEDVAEGYLTELVRRSMIQVVARNSFNRIQCLRMHDILRELAIFQSK

KESFSTVYDDTHGVVQVGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASYFIFSESKYLAVLELSG

LPIETIPYSVGELFNLRYLCLNDTNVKEFPKSITKLLNLQTLSLERTQLLNFPRGFSNLKKLRHLLVWKLVDATY

KSLNNWESLEPFEGLWNLKELQSLCEVRATRDFVSKLGNLSQLRSLCITYVRSSHCAQLCNSLSKMQHLTRLHIR

AMNEDEVLLLDDLMLPNPLEKLDLLGQLSKGTLESPFFTTHGNELLQLELSRCQLTVNLVAWLSKLSNLTELRLT

RVYTGQQLSFHANCFPNLKKALLWDLQQVNQIYIQEGALSSLQYLHIDSLMELRDVPTGIEFLRSVKEAYFTMMH

SDFVRNLRTGKGCLRNLLTCLENPAPTHNGAC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	167	476	2.1e-87
NB-ARC [Pfam fs]	179	476	4.9e-87
LRR [Pfam ls]	615	637	4.1
LRR [Pfam ls]	638	660	0.39

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	194	217	3
LRR [sensitive, ls]	194	217	77
LRR [sensitive, ls]	592	614	0.84
LRR [sensitive, ls]	592	614	22
LRR [sensitive, ls]	615	637	0.16
LRR [sensitive, ls]	615	637	4.1
LRR [sensitive, ls]	638	660	0.015
LRR [sensitive, ls]	638	660	0.39
LRR [sensitive, ls]	794	817	0.44
LRR [sensitive, ls]	794	817	11
LRR [sensitive, ls]	866	889	1.5
LRR [sensitive, ls]	866	889	39

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	40	912	1e-121
Mla1 [Hordeum vulgare].	47	832	1e-65
I2 [L. esculentum]	48	811	6e-55
Pib [Oryza sativa].	57	332	3e-17
Pi-ta [Oryza sativa]	78	645	3e-44
L6 [L. usitatissimum]	82	519	5e-16
M [L. usitatissimum]	176	519	5e-16
Pib [Oryza sativa].	181	898	5e-57
RPP5 [A. thaliana]	182	888	1e-21
N [N. glutinosa]	184	669	7e-18
RPS2 [A. thaliana]	184	882	2e-43
Xa1 [Oryza sativa]	205	749	9e-42

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4971.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)