Report for 4990.m00143

 > 4990.m00143, length: 678, copies: 1 

MQAFVFIFAVLALLAGDVEGRQGCYPFSCGHLQNISHPFRRRGDPQRCGVPSYELDCRDSKATIRINTGTYYVTS

INYTTSVFWVVDASLKDTNSSCPLPRSDQLPFVSGGIQGSHGGWDLALDPGPGATWVSFVNCSQAVRNNSVYVPV

DCLSTSSSFVYVFGSWIMPPSVFPIIGNLETSCRYLAMIPLGGWDSPLPHNASFSDIVRSMRNGFAVHFPIIHRW

SRIGHIKDCLMGSIRGFHEEPLSNQTIKDQIVDILFIDFSFWSCIIGGVGMKDYFDMPQYMMGMLRGKIEFYGGF

IVQFALFVFKWIAVLCRFVIAPLTLLTFLAFKYWKTRIKIDAVEKFLQMQLMLGPTRYAYTDIIAMTSHFRDKLG

QGGYGSVFKGVILPGDVHVAIKMLSNYNCNGEEFISEVSTIGSIHHVNVVRLVGYCAEEMRSALVYEYMPHGSLD

RFIFSPDKSLSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAKLYPRDNSFMPV

SAARGTVGYIAPEMISRSFGIISSKSDVYSFGMLLLEMAGGRRNSKQNMSSSSQSYYPSWVYNQLVQQKMGEIAN

AFNMHELEKKLCVVGLHCIQMKSHDRPTMSEVIEMLEGDVGGLQLPSRPFFCDDEPLPLLVDSCRFSSELTEISE

EDE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	368	564	3.1e-47
Ser/Thr pkinase [Pfam ls]	368	638	1.8e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	357	637	9e-40
Rpg1 [Hordeum vulgare]	357	637	2e-26
Rpg1 [Hordeum vulgare]	358	636	1e-31
FLS2 [A.thaliana]	374	636	6e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	256	275	out -> in
putative TM domain	296	315	in -> out

Report for 4990.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)