Report for 4998.m00060

 > 4998.m00060, length: 842, copies: 1 

MDSTFRKLKLVLALVGIITWIIGTCNAKFTPADNYLVNCGSTVDATVGQRVFVADNSQSIVLTTPQSQSIAARTT

LNSVSGFDNAELFQTARIFTAPSSYSFKMRSSGRHFVRLYFFPFLYQSYDLASSKFKVSTEDVVLIDNFPQPSNS

ISVVMEYSLNITRDRLILTFVPEGNSTSFVNAIEVVSVPDDLITDSAQLLGVGQYLGLAAQPLQTFHRINVGGPK

VTAENDTLARTWFADQSFFRNPTVAQAVTYQERLNYKDGSATQDDAPDSVYNTARRLVGQRNASSTPNMTWEFNV

DGRSSYLIRFHFCDIVSKAAFQLYFDVYVYNFSAAKDLDLSAREFGTLAAPFYMDIVLPSSDPSGNLTVSIGPSS

LPNATPDGILNGLEIMKMNFSSGSVYVVKPPSAAKQQLPIILGSVLGGIGAAIIVVVLCVVFRRKKKMKKPQTPL

TSRPSSSWTPLSLNALSFLSTGTRTTSRTTYTSGTNSDTSYRIPFVVLQEATNHFDEQMVIGVGGFGKVYKAVLQ

DSTKVAVKRGNQKSHQGIREFRTEIELLSGLRHRHLVSLIGYCDERNEMILVYEYMEKGTLKGHLYGGDQPPLSW

KKRLEICIGAARGLHYLHTGFAKSIIHRDVKSANILLDENLMAKVSDFGLSKTGPEFDQTHVSTAVKGSFGYLDP

EYYRRQKLTDKSDVYSFGVVLLEVICARPVIDPTLPRDMINLAEWAIKWQKRGELDQIIDKRIAGTIRPESLRKY

GETVEKCLAEYGVERPTMGDVLWNLEFVLQLQEAGPDMSNIDSMNQISELPSNAQRISSLEISTADESRTAMDYS

QMSTSNAFSQLINTEGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	505	707	1.5e-45
Ser/Thr pkinase [Pfam ls]	505	778	1.1e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	482	784	1e-107
Rpg1 [Hordeum vulgare]	491	776	3e-25
Rpg1 [Hordeum vulgare]	495	799	2e-33
FLS2 [A.thaliana]	498	775	2e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	415	437	out -> in

Report for 4998.m00060

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)