Report for 5006.m00077

 > 5006.m00077, length: 664, copies: 1 

MEKSKVVVFAGRVLAIVALLLACCCMAAAAQGGEGARVRESLIGFLTELAGGDKERARGIGWDASVEPCDGNRTV

WPGVGCNGAPAGDGRITAIVLERKGLDGTINAASLCAAAPALRVLSLEGNALRGDLPAAISGCARLTHIYVGDNR

LSGSLPPSLAELASLHVLNVSRNSFSGEIPAELSKLGLVRFCVNDNRFNGAIPEFELSRFEHFSVANNNLTGPIP

DDAGDFGRDSFLRQLGRPVRPAGLPAVPAPAELRRERWEEEEEGADDRHRRRPSGVGGKTAATTETSSSVTPGKS

AYSLPMSEERMNATAAAAAAVARATPASLVVLQRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLRSPAELLGRG

RFGSAYKVVVPGGAALAVKRVKDAAGAEEEEEFRRRMERVGKARHPAVLPPLAFYCAMQEKLVVYEFLGHGSLAK

LLHGSIESSQVALDWPARLHIASKVADGMAFMHGALRGGDGDGDGANANLSFSSSYEEDEAGGAIAHGNLKASNI

LFTATMEPCISEYGVTAPPPPSSAPAAALRADVRAYGVLLLELLTGKATAADGAELSRWVTAVIREEWTAEVFDR

AMLSSAGAGGDTVASEQRMVRLLQVAMRCIDDASSPSPPPTMREVAGMVNAIREEDDMSLSSEA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	116	139	0.59
LRR [Pfam ls]	140	163	0.33
LRR [Pfam ls]	164	187	0.087
Ser/Thr pkinase [Pfam fs]	366	536	3e-08
Ser/Thr pkinase [Pfam ls]	366	649	1.8e-08

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	116	139	0.023
LRR [sensitive, ls]	116	139	0.59
LRR [sensitive, ls]	140	163	0.013
LRR [sensitive, ls]	140	163	0.33
LRR [sensitive, ls]	164	187	0.0034
LRR [sensitive, ls]	164	187	0.087
LRR [sensitive, ls]	209	232	0.7
LRR [sensitive, ls]	209	232	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	32	226	1e-16
FLS2 [A.thaliana]	76	229	2e-13
FLS2 [A.thaliana]	91	227	9e-11
FLS2 [A.thaliana]	101	655	8e-14
CLV2 [A. thaliana]	112	230	4e-11
CLV2 [A. thaliana]	117	225	6e-12
FLS2 [A.thaliana]	117	224	1e-12
FLS2 [A.thaliana]	117	227	1e-11
FLS2 [A.thaliana]	117	230	4e-11
FLS2 [A.thaliana]	120	246	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 5006.m00077

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)