Report for 5011.m00081

 > 5011.m00081, length: 1071, copies: 1 

MVQEFTGIPSPPFVAGVGAPAASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPIAQKLPTASAQNSTMQQ

TRDPSALPHSSSFVTWTPDEFHSPGFNSSKQDERFVLENTLRGMYELIKLAECWVRKDYSIANLLQEAKDTVYCA

EDLLDELNYYELQDGVGFSANRSSCPEFSDIKMTEIHGKLNSLKEQMGHLGLHDMQPQHFIFESVSQKYGNLMYD

RTNFGYQEELQVLIDSFILDKNSLTSEQVSEVPSSGRAGQKNLSVLTIVGDGGIGKTALAHCSFNDQKVQDHFDL

LVWICVSDGFDDKKLIKRLAWAIAESEMKSDDLICLQRVLTNGMIHHSRRLLLVLDDLQEDVCQEYYLGWERFLA

PLKCASPGSMVLVTTRSMKVAEHISSVCLQLEGLPNEINWHLFSMHAFDLPISDSDQEVECIGRKIAARLNGSPL

GAKIVGCLLNLKLDAVYWKSILESELWELGHHKETRIWPALHLSYQYLPFHLKRCFSFCSMYPKSHEFDAETLVD

SWVAVGLVVSNGSVPAVDIGHEYFDQLVRRSFFQISPTSSSSRHAYVMQGLLYETAQKISTNECFVIKDSSDLLR

IPPKVRHVSILHFSGLSSSDLESLHKYKTLRSVVCISIDSDVITTSVLETWFCHLTNIRMLRFISCRLKELLGNV

GNLILLRYLDISSCDFEALPDSFWRLRNLEILDAQNCRFDSVPKDIVKLVKLRKARLRSDLNNQLGHVPGVGNLI

YLQDMPYYAVDDTPGRGIQELKNLNNLRGALEISGLHNVTSKEQAVEADLDKKTHLNTLTLSWHDSIRPDKHNGE

QEMEVLESLRPSPSIKNLEVRFYMGSGFHPSWLLDDEPISSRLESLSISSCPNIASLFITVTGSSSRGSSPVVFR

SLTKLSVTWCRKLMSLDNLLQPELLPEIKVIRISNCEELASLPTNQLIKFTHLEDLEVSHCWSLSWEQGLTLPRS

LKSLKLEACGELTDSVLRCGLRELPVLVSLELQFCSGVECIGGEIWSEMPSLQRLKIFCCQELSSIGGEESIARV

ESVDIRHCPKLRELEQPFQRG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	224	538	3.6e-40
NB-ARC [Pfam fs]	263	538	4e-44
LRR [Pfam ls]	680	702	0.31
LRR [Pfam ls]	703	726	3.1
LRR [Pfam ls]	952	980	5.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	680	702	0.012
LRR [sensitive, ls]	680	702	0.31
LRR [sensitive, ls]	703	726	0.12
LRR [sensitive, ls]	703	726	3.1
LRR [sensitive, ls]	867	903	1.7
LRR [sensitive, ls]	867	903	42
LRR [sensitive, ls]	927	951	0.85
LRR [sensitive, ls]	927	951	22
LRR [sensitive, ls]	952	980	0.2
LRR [sensitive, ls]	952	980	5.2
LRR [sensitive, ls]	1001	1025	0.94
LRR [sensitive, ls]	1001	1025	24
LRR [sensitive, ls]	1049	1069	2.5
LRR [sensitive, ls]	1049	1069	65

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	112	1039	1e-97
Pi-ta [Oryza sativa]	126	732	2e-14
Mla1 [Hordeum vulgare].	142	711	1e-17
RPM1 [A. thaliana]	144	960	1e-39
RPS2 [A. thaliana]	247	942	4e-23
Xa1 [Oryza sativa]	252	1058	1e-66
Pib [Oryza sativa].	266	728	2e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5011.m00081

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)