Report for 5011.m00083

 > 5011.m00083, length: 1273, copies: 1 

MAMGDGAPTMGGLVARIWDPNPLEATVACLLSSIPSPFFLVPCPIYTNEASPSQPSPCWNGIDGSPESKGDADLG

EVQQHSGAVDDILAWALRDGESFPMWSRGRRMPRRSKEKPEPPVIVARESTNTMRSHMMEIADGEDVAEAVADFA

RRRQSWVASLRQPGEPGSVIELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNVVGALRARGHVTI

LAAVVSNVTYECLSPEHDVVDDPGKVPAAVTESHSRMEPLSCTTPEMKMETDAVQLKCDWPMQQSDDTNLRLHRD

KQWAVQDKRQVLQRTLTEMHTFIKHAEWWFHKDVFAQVLQDAKDAVNCAEDLLDEINYHELQNKVEGHAILFHVQ

DYHETKIDKIQGKLEHLVRQMEQLGLYDERQQFIIESINREDDLFGEEQTIFGRQKEMSELIELIVLQENSPTDK

QVTEVHAVSDSKRAKLENVSVLPIVGSGGVGKTTLAILVFNERRVRDHFDLLIWICVSDGFDEKKLMKRLAWSVA

ENEMKTDDLGCLQRILTNGIIHHTRRVLLVLDDVQTDACREDCHGWKNFLAPLKYARSGSMVLVTTRYHRVAERV

GTLKHMFLEGLPEETIWEFFRMLTFGSRNSNSNAVLEPIGRSIVARLDGSSLGIKIIGRLLSLKLDAKYWKIILE

SELWGWPHQEEASIFTALQLSYQYLPFHLKRCFSFCSLYPRGYEFDAETLVDSWVAVGFVMPSRSILAVDIGHVY

FNQLVSRSFFQRSPTSSRYVIHDLLHDMAQYVARNDCFMIKSRCGMSRIPPKVRHVSILGNGELSSTDIECLNTY

KTLRSIVCIGVGCDIITNSVLETWFDHLTRIRMLRFISCRLKELPCNVGKLIHLRYLDISACDFDKLPTDLFCRL

YKLEILDAQNCTLHAVPKDIIKLVNLQRLRLKDDLISQLGRVPEVGKLTLLQNMPYYAVDDKPGRGIQELKNMNH

LHGGLEIDGLRNVTSREEVAGAELAKKIYLDTLVLKWHESIRPQKHNSTKEMEVLEALRPSSNIKHLEVKFYMGD

GLSPMWLRHDELSSLASLSINSCPNTTTLFLIEPSETGSSRSSSVSFQSLTKLSITWCRSLTSLDNFLQPECLPM

IKVIQISNCEELASLPTNNLVHFVHLEDLEICHCWNLNWEPGLALPPSLKSLKLEACGEFSDSTLSCLHNLTALT

ILNLRFCPSIESISAQIWSGLWSIENLKIVCCQGLVTVGGSESIAGIKNVDIRHCSKLQDLEQPFRSGQADSQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	409	740	1.8e-44
NB-ARC [Pfam fs]	467	740	3.1e-48
LRR [Pfam ls]	878	901	0.32
LRR [Pfam ls]	1198	1222	4.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	855	877	3.1
LRR [sensitive, ls]	855	877	80
LRR [sensitive, ls]	878	901	0.013
LRR [sensitive, ls]	878	901	0.32
LRR [sensitive, ls]	902	924	0.32
LRR [sensitive, ls]	902	924	8.2
LRR [sensitive, ls]	925	949	0.88
LRR [sensitive, ls]	925	949	22
LRR [sensitive, ls]	1099	1121	1
LRR [sensitive, ls]	1099	1121	27
LRR [sensitive, ls]	1125	1149	2.1
LRR [sensitive, ls]	1125	1149	53
LRR [sensitive, ls]	1150	1178	0.45
LRR [sensitive, ls]	1150	1178	12
LRR [sensitive, ls]	1198	1222	0.16
LRR [sensitive, ls]	1198	1222	4.1
LRR [sensitive, ls]	1246	1266	3.1
LRR [sensitive, ls]	1246	1266	79

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	334	1161	2e-40
I2 [L. esculentum]	339	1235	1e-97
Xa1 [Oryza sativa]	381	1255	5e-72
Pib [Oryza sativa].	422	927	6e-34
Mla1 [Hordeum vulgare].	460	954	6e-20
RPS2 [A. thaliana]	467	1216	3e-26
Pi-ta [Oryza sativa]	469	951	4e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Domain of unknown function (DUF296)	129	237	7.1e-27

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	378	399

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5011.m00083

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)