Report for 5076.m00084

 > 5076.m00084, length: 605, copies: 2 

MQFRLVILVLLLSCSLQLLRAFPFPIPFFGPFTSPQDVDAINELYASLGSPDLHGWASSGGDPCMEAWQGVQCLG

PNITAMDLSSNRIGGVIPESLPPAVKQLNLSSNSLSGKLPDSMAKLNSLSTLRNGNHLTIPTMPGSSPTPDTIPG

SPPTPAAAVAAPRSGASHPPIYVIPATPHGAAQGDPPRHGKKVSPAKAAGFSILAAGSLTIAVVLIVFAVSKRRR

ETSLHGGFLRGVEMSTPDWSGKPSGQSAVVKVDKEQSTVAEEKDTKGSISSYQKNVQESLQNHPLQFKFTIFTVA

SLQQYTNSFSEQNLMRQTLFGKIYLAEQQDIKFAVLKLDEAMARMPVDEFLRMVQRISELQHPNIEELAGCCVEH

GQRLLVYKHFSDETLDDMIHLKKLASSDDPAAKITLPWDARVAVALEAAKALEYLHEGGQRQVVHQHFRPEHVLV

DGEMRVRVSGCGLAAAVKSGLDLQSECWLDALSYEPPEAAAAPWTDKGDVYSFGVVMLQLLTGRRPYDGARPRGE

RRLVAWASSRLHDLTALEKMADPRLGTPATVRSMSRFADVISRCTQQEAEFRPAMSQVVQDLRRALQPARDACGQ

QSCSN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	77	97	7.9
LRR [Pfam ls]	99	122	6.1
Ser/Thr pkinase [Pfam fs]	320	440	0.00026
Ser/Thr pkinase [Pfam ls]	320	589	2.3e-10
Ser/Thr pkinase [Pfam fs]	493	519	0.0047

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	77	97	0.38
LRR [sensitive, ls]	77	97	7.9
LRR [sensitive, ls]	99	122	0.29
LRR [sensitive, ls]	99	122	6.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	263	589	1e-15
Pto [L. esculentum]	275	592	4e-27
Rpg1 [Hordeum vulgare]	297	585	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	198	220	in -> out

Report for 5076.m00084

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)