Report for 5089.m00055

 > 5089.m00055, length: 981, copies: 1 

MEHAVVSAAEGAIHTLLGKLGTIVLQEAQLLGGIRGELQHLKDELESMTAFLQDLSGRDECGKQVKIWKKHVREI

AYDIEDCIDEFKHQLGDSSSAGGSGPVVFFRKATHILQTTRVRHQIAKQIQELKRRTMNISARNSRYSANHLISG

TAGNSMAAYDSQANLLNVDTRITALFPERRQLVGIEPRQGNLVHWLLEAHVQQLRVVSIFGFGGLGKTTLAMTTY

QSLSGRNGPFQCQAFVTVSQSFDVKVLMRDILLQITQPVNQPSSPSTGAGKGPMEGLLKGMEAWNVVQLASILRQ

QLENKRYLIVLDDIWSMTAWEGIRFSLPDSNNGSRIVVTTRIRAVAHTCCFHEYDRAYEIKPLTDCESRDLFFKR

IFGSSICPEHLEDISAKILGKCGGTPLSIVSIAGLLASKPVHSKDLWEKIYSSLGSEIETNPSLDRLKKILELSY

NDLPYHLKTCFLYLSIYPEDHNIRRKTILRRWVAERFVTGKRGLSVFEVAESYFDEFINRSIIQPVTTSFTGKVK

TFRVHDVMLEIIVSKSIEDNFITLVGEQNTLFPQEKIRRLTVHSRGVKYIATREILCHVRSLSIFADGETLQFGW

MKLMRILDLEGYEFLRNRDLKDLCRLFQLEYLNLRRTHITELPAQIGNLKKLETLDIRDTAIKHLPPGITNLPHL

ANLLGGRRSYNHTGRWPISEFWGLHIPNELRKMDSLTTLAQVEITTSTSHYISELSKLSRLRKLGVLMFVDDDST

WASLISALEKLSGSLRSLLLWRPDGAMNFNIVNSLSSPPIFTKSMNLRGQLTQLPCWFPLLSNITELTLRATELS

AEEDLKVLGSLPSLLYLRLHHNAYIGTEFSASAGEFPSLRLLVIHLDMSEDWEARFEEGALPKLARLELSLFEEA

SIQEITGIEFLPSLKEVSIRACHSNIVNVEEIATSLRADAEKNINKPIVTFEEKQWVPMRSRTDPPLDHMGNLLS

SSFDED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	167	263	1.1e-14
NB-ARC [Pfam ls]	167	493	1.3e-62
NB-ARC [Pfam fs]	290	493	8.2e-48
LRR [Pfam ls]	628	650	0.031
LRR [Pfam ls]	651	673	0.033

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	628	650	0.0015
LRR [sensitive, ls]	628	650	0.031
LRR [sensitive, ls]	651	673	0.0016
LRR [sensitive, ls]	651	673	0.033
LRR [sensitive, ls]	813	837	2.9
LRR [sensitive, ls]	813	837	61
LRR [sensitive, ls]	838	868	1.4
LRR [sensitive, ls]	838	868	29

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	1	662	2e-81
Mla1 [Hordeum vulgare].	11	896	1e-109
RPM1 [A. thaliana]	17	932	6e-92
Pib [Oryza sativa].	48	450	7e-21
Pib [Oryza sativa].	161	950	2e-82
L6 [L. usitatissimum]	175	844	6e-13
M [L. usitatissimum]	178	467	1e-12
N [N. glutinosa]	180	678	5e-14
RPS2 [A. thaliana]	180	735	3e-23
I2 [L. esculentum]	202	922	1e-36
Xa1 [Oryza sativa]	204	973	3e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5089.m00055

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)