Report for 5125.m00183

 > 5125.m00183, length: 976, copies: 1 

MAEAVLVSLSAKVAMALARSTAMGVVTSLGLGGVHSSIAAAEHELSLLRGHLRSGGASCRGADDDDQDPIDSWAN

QVRDVAFQLDDITDECCFLSGSGSGHGFARYCANVPTWIALSRRLRKVREKLGQLLEAANYQRQRVDVMNNFVSC

GELRREDDAVAAGRRMAENARSMDKEEIIGFSDHREVLVRWLLAEDAAEPRRRTLLAVCGMGGVGKTTLVASVYK

EVTAPAAAPASHHFDCDAWVTVSQRFTMEDLLMKILRKLNLNTVGRRAGTGRRRRRSATDVGDGGGDTDYGSLVA

ALRERLANKRYLIVLDDVWDETLWDGLERAMPDGDGVAGSRVVITTRKSGVAMAAAPERTMALEPLPTHQGWALL

CSVVFKDVPGHRCPSHLREVAGDMLERCRGLPLAIVAVGKLLRHKDRTEFAWRNVRDSLAWVKNSEDLGIGEASR

ILNLSIDDLPYKLKKCFLSCSIYPEDFLIKRKILIRSWVAQGFIDEAKEVHGERRTMEDVADHYLDKLVQRSLFQ

VAVRNEFGRAKRFLIHDLIKDLINHRSKHEEGFVQFAECDLTMDSNIRVRHLALDRCTSSRRSASAAKIAALRSF

QAFGSKLDASLMSCFRLLTVLNLWFIEINKLPSTVTNLRNLRYLGIRSTFIEELPKDLGKLQKLQTLDTKWSMVQ

KLPSSLSKLKSLRHLILLKRHAADYYRPYPGTPVGQLPAGLQNLTSLQTLNYVRADEMISKSLAKLEQMKSLELF

DVDASFAAVLSSSILKMSHLQRLGLTNSNTESVIDLESITVAPRKLQKLALSGRLARGKLPGWTCFLTSLKQVHL

IASGIAQDSLLLLSSLPGLLHLSLNAAYREKEMTFAAGGFPALQTLTLHELSNLSQIEFQRGCLAELHELVLDKC

TKLADSPKGMENLTRLQNLKLVGMAPELMEKLQDGKGDDGCYYKPGTGSSMICQVPSPSRYHMKSIVFLKPPAVL

V

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	161	264	4.3e-14
NB-ARC [Pfam ls]	161	499	1.1e-66
NB-ARC [Pfam fs]	294	499	4.7e-53

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	617	639	2.7
LRR [sensitive, ls]	617	639	73
LRR [sensitive, ls]	640	662	0.04
LRR [sensitive, ls]	640	662	1.1
LRR [sensitive, ls]	891	914	2.5
LRR [sensitive, ls]	891	914	67

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	10	937	1e-102
Pi-ta [Oryza sativa]	36	722	3e-53
Mla1 [Hordeum vulgare].	65	889	3e-57
I2 [L. esculentum]	70	917	1e-49
RPS2 [A. thaliana]	149	921	1e-36
Pib [Oryza sativa].	165	921	1e-49
L6 [L. usitatissimum]	173	802	1e-13
M [L. usitatissimum]	173	507	8e-13
Xa1 [Oryza sativa]	204	904	2e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5125.m00183

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)