Report for 5128.m00175

 > 5128.m00175, length: 1448, copies: 2 

MAEGFISLTQGTEIDRVAENYFYELVNRGMIQPVDVDYNDEVISCTVHHMVLDVITNKSMEENFVTVIDCSETSI

GFPHKVRRLSLRFSSTKYATNLANITLAQVRSWYFVGLTNFVPSIMEFKLLRVVILQLWGCHDGQSSFNLTNIGR

LFQLRYMKISCNISVDLPLKMQGLQYLETLEINARISAIPSDIVHLPRLFHLHLPCITDLSNGIGSMRSLRSLGY

FDLCNNSEDNIRNLGELTNLQDLRLTCSTVPFDRLERNMEVVSSFLWRLGNLKSLSLVPSHSASSKCISCDGLRI

VSTPPRLLQKLELLMPIGVFSRLPKWIGQLDKLCVLKIVVREVLRYDIDNLIGLPSLSILSLNVRTVPSSKIIFH

KTAFPALKYLKFKCRLLCLSFEEGAMPNLKRLKLGFNAHGAEEYCSTSVGIEFLLSLTEINGVIGVFGASKSDRI

AAERVLINVSKVHPGCPSINIHQVDCIFDGNEAMSSKAEEKAYMSLQETQCQILEKVLTDQHGILELNTQKNKEG

RVVRRASPLCILAGTSFSRFPDTSGPLAASPPQLPYIEHERDKGRKREREMASVSVSTGVMNSLLEKLNSLPCEE

NYNLKGVRNELVLLKSQLSELNILLEVLAEMDEPAPLAEKWMSQVKELTYDVEDYIDDLSCQGHYYAGLVGIEGP

KNKLIKLLMNVHAEQGLKVLSIVGFGGLGKTALANEVYHELGEQFEYRVFVSVTQRPQIAVLLRNMLSQLGEQKS

AESNDVQYLISKLREHLNNKRYFIILDDLWDESVWNILSCAFPTNSHGSRVITTTRIETVGRACCAYQADFIYKM

QCLNAKDSETLFFSRIFGSKDQCPENLEEGLVEIVRKCDGVPLAIVTVAQHLASRQTTFKEQLESLRSSLCTILG

TCSTFQGIRHTLNLSYINLPNYLKTCLLYLGIYPTGYTIRKDDLVKQWVAEGFASSMHGQDAEHVAKGYFNELVN

RSVVQPVDTDYNDEVLSFRVHSSMLEFIRYKSAEENFLTVVDQLGATRGRPDKIRRLCLHVNESSAFRIPASFDL

SQVRSLLFFGASVMDVSEYRFLRVLILQSFDSGLLQEIDLTGIQALFQLRYLKVSAYITLLPRRIGMLQYLQTLC

IEGSRLLYMPPDIVCLPNLSHLIVPSQTSLPDGICNLKSLRTLKCFDLDMNSSKNIKGIGELTSLIELDYFFDGR

KLKTEKQDALCCSLGKLAYGKLKYLYISAPGSGYNASRLSNVSPSPQHLEKLVLSGCWFLHVPKWIKELRELYSL

VLSVEDLDMSDVRALGGMPTLVHLFLETRRGPMENSITITDKSFPALKHFEFSCRAPCLIFQAGAMPQVERLSLN

FAADGWNKCNSEAIGIERLTELKEICVQVLGSGANRLNTESRILAEVYYYFEQFHAHGKNVRYSYNNDVDHSYFN

DDGDDDYNGDSDTWRVRRLKILP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	655	959	5e-56
NB-ARC [Pfam fs]	669	959	3.3e-57

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	471	3e-28
Pi-ta [Oryza sativa]	1	260	4e-52
Pib [Oryza sativa].	2	454	1e-17
Pi-ta [Oryza sativa]	319	478	3e-26
RPM1 [A. thaliana]	614	1307	2e-49
Pi-ta [Oryza sativa]	656	1190	4e-97
N [N. glutinosa]	665	919	6e-11
Mla1 [Hordeum vulgare].	669	1347	1e-86
Pib [Oryza sativa].	669	1349	1e-56
RPS2 [A. thaliana]	672	1140	2e-27
Xa1 [Oryza sativa]	680	1255	7e-31
I2 [L. esculentum]	681	1349	2e-36
Pi-ta [Oryza sativa]	1259	1423	6e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5128.m00175

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)