Report for 5144.m00159

 > 5144.m00159, length: 1441, copies: 1 

MDQSAVSSLLGQLTGLLVDEAKLLGGVRGDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQRQVREVAYDS

QKCIDHYVQTVGASRPSAGLLGSVQWLPQLVMTLPSRQRTANKIKKLKARAREVGERRQRYGVKAPTRSGGVKVI

TAPMLSPQQEAAEHARRRRAIADATDWVNTDAQHVMDWIAAGGKGHNDDDGGREEYIHWIKGFLHMPHFTTESFL

TELMSNKADATAFLLEYTKELFGGPLHYLEGHLLWPHKDDGHDKKATTAAASSPSQDHHDADKKKPVAAADPSER

AKEAAVDPSGKAKEHKRWITQGEKKAADTSTSSEVHDSAEKRMPLADVNPSEMAEASSADDGHNKATEGHTKELF

GGPLHYLKGHLLWPHKDDGHDKKATTAAASSPSQDHHDADKKKPVAAADPSERAKEEKKHQIISWVHGALTSDGI

NIFHTKDTHGPRLLAIVTSPVRREAHDLEDEEPHGLRPATEIARRVFNNYYSRQGGRFDFAVWVNAEEHSHSTAR

LRSILQQVEKQAQVQPQEQRQHPSSSSRDKKDGGDETTRLQQEILKHLTGKKFLIFLADHQDETPWTQILPALPT

DSTNESAVILSPLVQQAYQYVGWYVLSLFFLLKHSRYRVYFYSHLVATRNKAKELLRVGADQHKGEDLHDLVNHI

LERCRWDSFSSKMFLHALYANHQRSKPELENLLLSLNEFSTVSNARNMIKFCYDDLHSYKVCFQYLSIFPLGFKI

RRTSLVRRWAAEGLIVGRDGLAATDEAERCFDAMIDRGLLLPADNTDNPSGKVKMCTVDPHVFSFIARLHKDDGR

APAADSIDLPPALAHRISIARRIQLSNKTRQRVSEGLKKQMDGGGEPQDSVAQGMVCGIQLSNKTRRRQASEGLK

KKMDSNGEPLVPEPRSQDSAVEDVVKLLDLFPTTESGWIKVLDLEGCRGLKKKHLKNICNRVFQLKYLSLRNTDI

AELPKEINKLQDLETFDMRGTNIESFPAKSIVLPKLARLLSGVAHTDAPTPSKDDNLTSRGSSHESFTAIHIPRG

IKNMTSMQILSHVQVSDHHDEAAALEDLARLQLLWKLGVVIHAKQAYLVLKVVGMLNECLRSLSIRLQDGGEDPD

LNNTPPIFSPPRSLASLSISGRIGGLPTWIQNLEQLSDITLCDTSLKDSDIKILCASINLRFIRLLRESYNQNKL

SFEKGFRNLEILIIEGSGTISDVHFDPRVAPKLEKIVWSSTCKMENLGIDNLQGLKEIVLKGDCDLNRIRLSVKA

NPCHPNLTHTPTLNSPTIQPGLNKLAKVTLSSTSLNQDNLKVLGELSSLCYFRLRHNGYTGEKLTFKKDEFKNLK

SFLVEDPSMISIEFQKGAAAELEKIVFSSTNIKSLHRLGGLPKLKEPELKSNRFLVSFSEEGETHKKCSLASSPS

RRMNSNSSSTSLLRDC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	724	770	9.8e-08
LRR [Pfam ls]	964	986	1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	703	724	6
LRR [sensitive, ls]	703	724	66
LRR [sensitive, ls]	964	986	0.093
LRR [sensitive, ls]	964	986	1
LRR [sensitive, ls]	987	1010	1.7
LRR [sensitive, ls]	987	1010	18
LRR [sensitive, ls]	1208	1231	3.9
LRR [sensitive, ls]	1208	1231	42
LRR [sensitive, ls]	1371	1392	0.67
LRR [sensitive, ls]	1371	1392	7.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	490	1282	3e-14
Pi-ta [Oryza sativa]	490	816	2e-13
Pib [Oryza sativa].	503	1273	2e-29
RPM1 [A. thaliana]	939	1260	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5144.m00159

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)