Report for 5148.m00161

 > 5148.m00161, length: 664, copies: 1 

MVEPVGAGGGGSGWGAEGLALLASAPPARDKGLRRRRRPRMTAHGRDIDDGQLFVRVPVHGTEAVCVNASEGATE

QLEMKMSTGENLQAGLLSRTPPFGLRLWVVLGISIWAAILFVLGCICFFLIYWRKRGNRFGDTAEPEIPDITKEI

AVDEARNRVAAENVQRQESYTLSLKERQTNKGSRKMLAHFLSCKSSGSHNLVGCSSMYQNDKAQCSYSSDEGTSG

HNEREYSQYATMSTSPQIGLPEFSHLGWGYWFTLRDLEDATNGFSDDNIIGEGGYGVVYHGRLINGTDVAIKRLF

NNIGQAEKEFKVEVESIGHVRHKNLVRLLGYCIEGSYRKLYIFLAVTATICPLAVTQPSMSQVNYNLRKKQNVQV

WQLDMVYSKTSLGFSRCRMLVYEYINNGNLDQWLHGARSQHGVLTWEARMKIILDIAKALAYLHEGIEPKVIHRD

IKSSNILIDKDFTGKLSDFGLSKLLRAGKSHITTRVMGTFGYVAPEYANTGQLNEKSDVYSFGVLLLEAVTGRDP

VNYGRPTDEVHLLEWIKLMASSRRAEEVVDPAMEAKPTKRQLRRALVAALKCVDPKADKRPTMGSVVRMLEADDV

ALSSRQYNHFVAVGVDAERLNHLKFLYALLLKDRRSPMGRCGDGDGSGRREPSGTSARYDTAFV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	269	344	6.8e-13
Ser/Thr pkinase [Pfam ls]	269	572	2.4e-37
Ser/Thr pkinase [Pfam fs]	394	542	1.9e-30

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Rpg1 [Hordeum vulgare]	242	595	2e-39
Rpg1 [Hordeum vulgare]	255	600	9e-31
FLS2 [A.thaliana]	257	595	9e-24
Pto [L. esculentum]	394	596	3e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	103	125	out -> in
putative TM domain	340	359	in -> out

Report for 5148.m00161

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)