Report for 5174.m00250

 > 5174.m00250, length: 900, copies: 2 

MELVTGVMGSLLPKLGELLKDEYDLQRGLREKIKSLSRELESVHAVLRKVGAVPSDQLDELVKLWARDVRELSYD

MEDIVDMFFVRFNDGHESDDPRPVSIDPRLQALYKRSTELIGVDGPMDKIINMLSPWNDIHLSDKKKIISIVGFG

GLGKTTLAKAVYDKLKPDFDCGAFVSVGRNPDMEKVLRDILIDLDKQKYKHSIIMTLNERQLINEIKDLVEKKRC

FIVVDDIWDKKSWELIKCALQDSNCGSIVVATTRISEVAMHVGHVYKMEPLSLDDSKKLLYARLAGAQGKCLNIP

PAVACEKILNKCHSVPLAITTIASLLVNKPEEDWSEVYNSIGFGHEGNNDVENTRRILSFSYYDLPSHLKACLLY

LSIFSEDVEIDKNILIWKWIAEGFVQDEQAAGVELFELGEGCFNELINRNMIMPVEVQYQGYQSKARYNEGYVYG

CRVHDMMLDLICSLSKEKNFVTLVDSYEQVELPLSHARRLAMQSMSIKEINRLQLPNMGMEQVRSFLANRCYGIS

LAFSDFRVLRILALEYCQGKINLSHFRSLYHLRYLGLVNAEITELPKEVGDLMFLQTLDLRETSILELPESVGLL

TQLLCLYVDHRTWAPVDLIGKLTSLQELCIRPAYAYDRFYDDKANGMRQFVKALGRLGELRVLQTQIDILDDSME

KDLLESLDNLQKIRSLEILGASRGLNVEWTRTGFISPRHLQRLYLECLEFSGLPAWINSSLLPNLSYLNMTMEVV

QEQDMETLGMFPILCYLKLYSRCTKLVSFKHTSNAGYFQKLKSFKIVGSSVRFDLSGCDIESSFMPSLETFETDV

HVRFLKDANMLGFDKLGLENLPSSLKRIIVVICCRDASGAEVEEAQAALEHATDSHANSPKLTIMRYGVQIKRPL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	100	405	6.4e-50
NB-ARC [Pfam ls]	100	405	1.2e-49
LRR [Pfam ls]	579	601	6.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	556	578	0.41
LRR [sensitive, ls]	556	578	11
LRR [sensitive, ls]	579	601	0.24
LRR [sensitive, ls]	579	601	6.4
LRR [sensitive, ls]	714	735	0.61
LRR [sensitive, ls]	714	735	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	889	1e-140
I2 [L. esculentum]	19	745	3e-34
RPM1 [A. thaliana]	107	771	3e-49
Pib [Oryza sativa].	113	612	5e-49
M [L. usitatissimum]	114	379	6e-11
Pi-ta [Oryza sativa]	114	591	2e-54
RPS2 [A. thaliana]	115	613	5e-17
Xa1 [Oryza sativa]	143	628	9e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	29	49

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5174.m00250

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)