Report for 5174.m00255

 > 5174.m00255, length: 1496, copies: 1 

MSSVVGKEVVDASSLITKGDMKDLLEDLLKMGMIGQRNVAGGSKLKLEVMPSELRLEGSKNYLSWCRRAQLMLRA

KGVDHFLQEGCEEPSDKESQAWRTWNTTNLTVMLLKHEEDIVIGNKWMQRRRVIHFLKGLNKEFEDRRAAMFHQA

TLPTMEEVIFAMVQEMRLKLMRGTNLTRSAYTVADNRECYNCGQVGHVSYNCPTPRNIGGRGLIRGGHGGFGGTR

GGFGGDRGGFGGNRGGRGGDWRGRGGGRGRTEVLLRPMQPLRREKGLGGGLGLESGVMGCGTSIMRNWIGWHFWD

GVVVMVNLSSFLLLPPNNYLNYPHWLHLSPPLSAWDGVRGVAASATGGTTVPVINPAVSAADPASVVGEKLKAAV

LAANPVLAASAMGGGSIGHVGGRRGGRSCVRSGVDSGWGGLFNAIDTILIIGRGAFSIAIMELVMGAMENLIPKL

GELLKEEYVMQSGVREKIQSVSRELESIHAALRKIGKVPWEHLDDELRLWAHDLREASYDMEDIIDSFLVRVDGH

EASEVHWFKWFLEKMTNQFNKIKASHEIGVAMKEIDEKLQEVATRHARYTIDNIAINPAGPATVDPRLLSMYKTL

AELVGIEGPMDELMKMLDIDLPTKKRKIEIDVSVRKPKMVSIFGFGGLGKTTLAKAVYDKLKPSFDSGAFIPVGQ

NPNIRKVFRDILMDLDKQSYNDLNLKLLDERQLINKLQEFLQKKRCFVVIDDIWDKDSWRLIRCALQDSNHESRV

VTTTRIYEVATQVGEVYKMHPLSHDESKKLLYTRIISGEGESLRSTSVEACDKILKKCGGVPLAIIIIASLLANK

PREYWSEVYNSIGLEHGYNDDVDNTRRILSLSYYDLPLHLKPCLLYLSIFPEDYYIEKNLLIWKWIAEGFVHEKQ

AAKLGLFETGEGYFNELINRSMIQPVEHEYSGYMCGCRVHDMVLDLILLLSGEENFVTVVDGSKEHELSWKNARR

LALQHWSFEENRNQLANMGVKQTRSLIMTECFDKNMQLPSFQVLRVLEIQKQGRWWNIDGKINLQHVRNLLHLRF

LHLDCIDSIPLIEQFRNLRFLQVLHLKESNIQELPESVGLLTKLLSLRVDIDVRVSPGVIEKLTSLQELYLWPYS

DDTFQFVKVLGKLRELRVLHAKNLKLDGQGETSALLESLCNLHKIQTLDIDLNLNPNEGVTWDAGFTSPQCLRYL

CLVSLRFHRMPEWINWSLLPNLSYLELRVNFLEELDLETLGRLPKLRYLHLFIHCDRIVSIGKIAGAGDACFQEL

RFLNTPYLYVRFDQHGIMCSKDEKAVMPNVKTLSFCVYVRILKDTDILGFDKLFSFAHLGRSSLQQVQVNIQCRG

ARAMEVEEAEAALAHAAAIHPNRPTLQIHKFSEGEMLPPHEEPSSFFPKVVVENLNAHERKDDDLRFVLGQMLQR

NPCVKKFSVSINCENACLEEVEKAEAAARYAVDFHANRPTLELVKYGEDKMVLSGQHQQVCTPGCLSDSNP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	588	901	1.2e-54
NB-ARC [Pfam fs]	637	901	2.3e-56
LRR [Pfam ls]	1070	1092	2.4
LRR [Pfam ls]	1221	1244	2.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1047	1069	2.9
LRR [sensitive, ls]	1047	1069	77
LRR [sensitive, ls]	1070	1092	0.092
LRR [sensitive, ls]	1070	1092	2.4
LRR [sensitive, ls]	1221	1244	0.086
LRR [sensitive, ls]	1221	1244	2.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	436	1378	1e-154
RPM1 [A. thaliana]	447	1252	1e-60
Pi-ta [Oryza sativa]	494	1201	7e-58
I2 [L. esculentum]	497	1260	5e-38
Xa1 [Oryza sativa]	541	1150	2e-29
L6 [L. usitatissimum]	602	1249	1e-10
M [L. usitatissimum]	602	875	1e-12
N [N. glutinosa]	613	882	4e-11
Pib [Oryza sativa].	638	1094	2e-49
RPS2 [A. thaliana]	639	1094	7e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Zinc knuckle	187	204	8e-07

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5174.m00255

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)