Report for 5174.m00256

 > 5174.m00256, length: 1048, copies: 2 

MGSLLPKLGELLKDEYDLQTGMKEKVKSLSRELESVHAVLRKVGEVTPEQLDELVKLWARDVRELSYDMEDIVDT

FLVRIDSSETDDRSVLRHLRKKMSRLFKRTKDRRKIAGAIKEIDKKLQEVEARRARYTVDSIITKPAGPASIDPR

LQALYKRSTELVGIDGPVDKVIKMLSLGDDRNMKIVSVVGFGGLGKTTLAKAVYDKLKPDFDCGVFVPVGRVPDI

QKVLRDILIDFGFKVSDVMILDERQLIDKLQNFVQKMRCFIVIDDIWDKKSWELIRCALQDCKCGSRVVATTRIS

EVATHVGDVYKMQPLSRDDCEKLLYARIVDSEGKCLDSPSVEACDKILKKCRGVPLAIITIASLLASKPMEDWPV

VYNSIGFGHEGNDDVANTRRILSFSYYDLPSHLKPCILYISIFPEDYEINKNLLIWKWIAEGFVHVEHVGIGLFE

VGEGYFNELINRNMIQLVKAENEGYISSCRVHDMVLDMVRSLSSEENFVTLWDSSEKQKLPRRNARRLALQSRSI

KEQNGNQLASTSMEQVRSFIANDCDDISMLFPRFRVLRVLILEDCDDVEDVEGCGGNSVDHLGSLLHLRYLGLPD

TDISKLPKEVGGLKFLQTLDLWNTGIKELPQAVGLLTQLLCLHTDRSTTVPAGLIGKLTSLQELWTWPGSAYYRD

MDPVAGAASTRRFAKELGNLRELRVLRASIYAVDESTERDLMESLLGNLQKIQSVDIFGSPLERGVTWDAGFASR

WRLRHLNLECFELSRLPASVNSSLLPNLSHLDMKVQVMQEQDMETLGRLPELRCLVLDSRYTKVVRIKNTGSDCY

FKKLRFFTMGSSSILFDVQGSECAIMPSLESLAFSVHVRFLKDADLLCFKKLGLVNLPSSLQRVTVEINSWDAHD

TEVEEAEAMLEHAAIVHPNHPIFQTTRPFGKYIMLLPDQEPSSTNPKVDRCDVNLRKNDGDHLDFRWLLMNPRVE

KFCVSINCENASLEEVEEAEAAARYAVDVHPNCPTLELVRYGEDKMVLPNPQQQFAAENLFLQLVSCAKCDVK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	146	444	1.4e-68
NB-ARC [Pfam ls]	146	444	3.8e-69
LRR [Pfam ls]	592	614	2.2
LRR [Pfam ls]	615	637	2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	561	583	2.8
LRR [sensitive, ls]	561	583	75
LRR [sensitive, ls]	592	614	0.084
LRR [sensitive, ls]	592	614	2.2
LRR [sensitive, ls]	615	637	0.074
LRR [sensitive, ls]	615	637	2
LRR [sensitive, ls]	752	775	1.9
LRR [sensitive, ls]	752	775	50

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	928	1e-161
Pi-ta [Oryza sativa]	1	620	4e-62
RPM1 [A. thaliana]	11	811	1e-59
L6 [L. usitatissimum]	50	506	8e-13
Pib [Oryza sativa].	53	326	9e-16
Xa1 [Oryza sativa]	78	664	2e-30
Pib [Oryza sativa].	159	857	5e-56
M [L. usitatissimum]	160	505	2e-15
RPS2 [A. thaliana]	161	624	3e-22
I2 [L. esculentum]	169	799	5e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5174.m00256

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)