Report for 5178.m00202

 > 5178.m00202, length: 1031, copies: 2 

MTEGVVKFAVDKLESMAAQELKLQTEVGKKVLELRHELEWLRTFLRDADRKRRGSSSSSATGGAAAAAYDELIEV

WVRQTRELAHDAEDLLEEFVHRGELHCHGCFDLPSFLRWLRHSAAGVFARHAIFDGIEDINKRIEQMKQQRKECN

LEKLPCASKPHRKKYTDWSSLTELEIEDNLVKIGDYDEIKRLVLDQSRQRTVINLTGKSGIGKTTLASYLYRRSS

IRKHFACTAWVHVPRKFRFADLLHDVIRQANASSGHDDDELAAAAADDDVRRRGGMEAERLVKARLAAALQGRRY

LVVLDDVRSREEWAFFLAALPAGLAGSCVLVTTQVKISEESAAEQSGGVVRTRELGKLRPEQAAELFRRRVYGHG

EPDPKKMEQLKKVVDSMTKGSNLPLNIVMLAGLLRSKKEDEWDAVIHSLDDTPPPPTSPEQMPPEKDSLDDIAPA

AASETAPTSTEQTTKKKMKGKQMATSMDKILTVCMDDLPTHLKPCFLYFAGFTAQTPICAGKLVRLWVAEGFMQA

KNGQTVEEHGEECLKELISRCLVQLVETDAAGGRVAAVSVHQAVLDFAQAEARDTNFLHVHSGAAGLSNGAARRL

ALRNTYDTDLAVMLEAPKLHTLLCDIPERAADAAGAAAWQRALELINGRAPTFSVHGSRFLRVMDLKGVRLPHRE

SLPEEIGWLIHLRYLGLSHTAMRHLPSSVKRLRNLQTLDVSRTDVEALPWRLWRNPSLRHVMARRLAAWSAPDER

AVLPDLQTLHGVPWGRWARSGGGGAIGKMTSLRSLMAWNVSAAAAAGGGGGERLSSALAGLECLRSLDLEAADDA

ATTLPLWDLLTMLGLRQLEYLTLRGRVAPWNPPPPETTTTPTTPPPLQGHHHHHHHYLLPNLAKLELHRSECDQP

LIDAIAKLPNLAELVLDEASYVKPYMRFPAAGFPKLRKLQLTSLDKLTECTAAAAAAGDGGGGALPQLRHVSVFH

CGKLNTFPVKMAPKLELLTIHDSEELKNFMDCNQDNEHIHVVHGKMSKRRVMTAPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	166	528	2.2e-25
NB-ARC [Pfam fs]	189	428	1.2e-22
NB-ARC [Pfam fs]	459	528	1.4e-11
LRR [Pfam ls]	686	708	2.4
LRR [Pfam ls]	709	732	1.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	170	198	1.4
LRR [sensitive, ls]	170	198	38
LRR [sensitive, ls]	686	708	0.092
LRR [sensitive, ls]	686	708	2.4
LRR [sensitive, ls]	709	732	0.059
LRR [sensitive, ls]	709	732	1.6
LRR [sensitive, ls]	886	909	1.9
LRR [sensitive, ls]	886	909	51
LRR [sensitive, ls]	967	991	1.7
LRR [sensitive, ls]	967	991	46

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	996	5e-52
Mla1 [Hordeum vulgare].	4	724	3e-35
Pi-ta [Oryza sativa]	18	714	8e-30
I2 [L. esculentum]	29	761	7e-30
Pib [Oryza sativa].	71	367	2e-13
Xa1 [Oryza sativa]	182	738	2e-17
Pib [Oryza sativa].	185	740	8e-31
RPS2 [A. thaliana]	194	1005	1e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	132	152

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5178.m00202

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)