Report for 5229.m00128

 > 5229.m00128, length: 717, copies: 1 

MGCCRPHLRPDLGEGLEGRGGADALPPRRGVEGRGIGEGKRWRLQSCKLKLQSAFPLSAKISDGHRMRAYTKRKV

VWPWWALALLEFLSLGQQYFIVIDDMREELWCDTEHAFPADDGVSSRIVVTTNIQSIANACSTAEGYVYKMGKLN

TEYSKGSEQLRKKCDGLPLALICVGQFLLSEGTVTGPTCSDVCSNLGHHLENKSNSNALARMQRVLTRSYTCLSG

DAAKACLLYLGMFPGNHSIRRKRLLRRWLAEGLVKRQPHPRLGDSAVESFKMLMDQNIVQPVDVSNNEGVKTCQL

PGMMLEFIMHRSISEGFITIFRGEDEMLLLPDQYAVRCLSVQCRSTAAANIGLERNDLSLLRSLTVSGEVCQDFL

DFKEYKLLQVLDLEECDGLMDGHLDGICKLLLLKYLSIGGAVTTLPKMIGRLKFLETFDVRRTKVEVVIMPAEVL

VLPKLVHLFGKFELSGSVSNKIQQIIKSGKSNLQILSGFVAGSNHGFVQLMCHMKNLRKVKIWCKSATKRNKSIS

LSSAIQKFIENGNDPNDARSLSVDFSECSEDILQISPRGDCNLRSLKLYGELQKIPKFFASLLALRELYLSSTTI

RGDVLTALSELRYLVYLKLIAENLEDFMIKYGAFQSLQRLCFVIQRLTLPGIQEGALPQLVSLQLIYENLANVCL

INIGGIKRLKEVMLDSKMNVESKEYWEGAAKKHPNRPKVLCI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	15	264	4.9e-07
NB-ARC [Pfam fs]	162	264	5.2e-13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	84	663	1e-18
Mla1 [Hordeum vulgare].	84	458	1e-32
Pi-ta [Oryza sativa]	92	458	6e-26
Pib [Oryza sativa].	120	458	2e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	75	97	in -> out

Report for 5229.m00128

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)