Report for 5254.m00199

 > 5254.m00199, length: 1266, copies: 2 

MPSTFGWSASAFVAAVLARLIGKGLALLAELDDAAAGHLRRLEALLAPVWRVLDAADAGAIDVVGHRRPLQDLLD

AAYAADDALDDLVLLQSDAMARGGEHGVDARGTPAAGAARKPKPCSPLRFLLCFSPPRNAVASSSSSSSGSHGKS

SKGNKSNPDLRGLGVAFEMMAQAAYRCTSAYEHVVAGKNYATMVSAQAEAATAAEAADYDQFQNDIFGRETEVEQ

ILEKVRFSDDPHYRLGIGVLPIVGVEGVGKTALAQFIFHYEVVKAEFPVRMWVHVSGEVQLKDELVVQMIHGVAG

DAHEVEDIREILHEELTGKRFLLVLDDVSDVGDIQWKDLMRLLQPAARRSMIMVTTQSEIAANAIGTMPPLILNP

LESEDYQKMFRHFAFGSSDESEDYTPLGDEWDDVEDEDEEEKQSPMEKVALELAKKMGGLPLPATAIARALFFRR

EDKEHWKNVLEDKLWEQRDVAGISPALWLSYQHLDPRLKQCFAYSAVFPCSHAFTKDELVQMWVAQGLIYSEDAV

ARPEDIGSKFFEDLVERCFFQPIGSSRYVVHNSMRKLAQAVSTDQFFMVTESSGDVPLEVRHLTIMTNNLSKLIN

DLSLKISHSSGSDQHFLQRIRTIIFFADFSNSDEFIEFLADIFKVAKDVRVLGVTYANIAFLPAEIGFLRHLRYL

NLLGNRIADLPESVCDLHLLQVLDVRCSSPYLRAPNGITNLIYLRHLHASEPFLSIIPKIQNLSHLQELEVYKVS

SISRIDALQGMTQLRGTLCLKDLHQVDVSELRKGILKGMQHLNILELSWSSSDSQSREASTDEDTLECLQPHENL

KDLRITGYRSTKCPSWMLKTPCSLSNATSVFLTDCVNLKNLPPFHIMPCLEILEMRKIHSVNKVNTVPQRSDQIM

FPKLKRLVFEDVLNCTEWSTGSSKSRNTVFPCLCEIQIRNCPKLRNFPDLPLTLTTMIIENVGLETLPRIQDRHS

LPPSSSSDAIATSKEGRWTSRLTTLQIHQCHGLKSLGSSLLQQQHLLRSLEVLSIKNCDNVTCDLSDGFQDLTAL

TDLSLYDCPKLLVDKFHTSLRKLEISECFITHGAWVDDYPFLFSVWTLKVTSCPHVSTDQESSFSIEPLDWLNCL

FNVCSLHLENTLLLKLSMFNRLRSLEILEIDGSRSFFDDLVEEFEWLEKLQALSIRNCKELRMLPANISTLPVLE

ELCIENCPALEALPASGLPTSLKRLSISKCSPRLTQRCLDDEPDNLNIAKIAVVYIDGQCISIQQK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	199	524	4.6e-31
NB-ARC [Pfam fs]	213	356	1.6e-19
NB-ARC [Pfam fs]	421	524	2e-15
LRR [Pfam ls]	671	693	2.2
LRR [Pfam ls]	1024	1048	4.6
LRR [Pfam ls]	1174	1197	5.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	584	605	3.9
LRR [sensitive, ls]	584	605	120
LRR [sensitive, ls]	671	693	0.071
LRR [sensitive, ls]	671	693	2.2
LRR [sensitive, ls]	740	762	1.1
LRR [sensitive, ls]	740	762	36
LRR [sensitive, ls]	851	873	0.87
LRR [sensitive, ls]	851	873	27
LRR [sensitive, ls]	932	955	3.6
LRR [sensitive, ls]	932	955	110
LRR [sensitive, ls]	996	1020	0.5
LRR [sensitive, ls]	996	1020	16
LRR [sensitive, ls]	1024	1048	0.15
LRR [sensitive, ls]	1024	1048	4.6
LRR [sensitive, ls]	1069	1097	0.46
LRR [sensitive, ls]	1069	1097	14
LRR [sensitive, ls]	1174	1197	0.18
LRR [sensitive, ls]	1174	1197	5.6
LRR [sensitive, ls]	1198	1219	1.1
LRR [sensitive, ls]	1198	1219	36
LRR [sensitive, ls]	1221	1247	4
LRR [sensitive, ls]	1221	1247	130

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	213	1261	2e-83
Pib [Oryza sativa].	213	724	2e-26
M [L. usitatissimum]	214	1214	6e-13
RPP5 [A. thaliana]	214	1231	2e-12
RPS2 [A. thaliana]	216	948	9e-27
Pi-ta [Oryza sativa]	216	764	3e-20
Xa1 [Oryza sativa]	216	1230	4e-75
RPM1 [A. thaliana]	244	764	8e-25
Mla1 [Hordeum vulgare].	247	858	2e-26
L6 [L. usitatissimum]	591	1197	2e-11
Xa1 [Oryza sativa]	950	1238	3e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5254.m00199

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)