Report for 5255.m00215

 > 5255.m00215, length: 557, copies: 1 

MRNLLLLPLLVAVAATVPLAAALSADGVALLAFKTAVTDDPSGALSSWSDADDDPCRWAGVTCANTSSSGPRVVG

VAVAGKNLSGYVPSVLGSLALLRRLNLHGNRLSGTVPPALANATSLHSLFLYGNSLTGGLPPELCDLPRLQNLDL

SDNSLTGSLPPELRRCKQLQRLMLSGNGFSGEIPAGVWPEMVSLQLLDLSDNSLTGAIPPELGKLAALAGTLNLS

RNHLSGGVPPELGHLPATVTLDLRFNNLSGEIPQSGSLASQGPTAFLNNPGLCGFPLQVPXRAAPPSSSTPPXXX

AAGSISGAGGPRQPVKTSLIVLISVADAAGVALIGVIVVYIYWKLRDRRGDGCGGDGDDDEERKRGLFPFPCMRA

DDSSDDGSDAGDDVKRNNTTTTTTASGGGGGGEEGQLVAIDKGFKMELDELLRSSAYVLGKGGKGIVYKVVVGNG

TTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYWSADEKLVVTDFVNNGNLATALRGEHTPSPS

PSPSQFVNLFGKRETYFLKKWSKLWLDYNKLW

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	96	119	0.018
LRR [Pfam ls]	120	143	0.0026
LRR [Pfam ls]	144	167	0.0012
LRR [Pfam ls]	168	192	0.11
LRR [Pfam ls]	193	216	0.00093
LRR [Pfam ls]	218	241	3.8
Ser/Thr pkinase [Pfam fs]	433	517	1.3e-05

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	96	119	0.0016
LRR [sensitive, ls]	96	119	0.018
LRR [sensitive, ls]	120	143	0.00024
LRR [sensitive, ls]	120	143	0.0026
LRR [sensitive, ls]	144	167	0.00011
LRR [sensitive, ls]	144	167	0.0012
LRR [sensitive, ls]	168	192	0.0099
LRR [sensitive, ls]	168	192	0.11
LRR [sensitive, ls]	193	216	8.5e-05
LRR [sensitive, ls]	193	216	0.00093
LRR [sensitive, ls]	218	241	0.34
LRR [sensitive, ls]	218	241	3.8
LRR [sensitive, ls]	242	264	1.2
LRR [sensitive, ls]	242	264	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	4	259	1e-10
Xa21 [O. sativa]	24	258	2e-24
CLV2 [A. thaliana]	26	258	9e-13
FLS2 [A.thaliana]	29	258	8e-30
Xa21 [O. sativa]	33	260	2e-25
Xa21 [O. sativa]	40	258	7e-15
Xa21 [O. sativa]	60	241	2e-13
Cf-9 [L. pimpinellifolium]	62	282	2e-15
CLV2 [A. thaliana]	68	258	3e-23
CLV2 [A. thaliana]	72	258	4e-19
CLV2 [A. thaliana]	72	257	8e-14
Xa21 [O. sativa]	72	284	3e-17
FLS2 [A.thaliana]	73	263	9e-19
FLS2 [A.thaliana]	75	260	3e-21
FLS2 [A.thaliana]	76	522	4e-32
FLS2 [A.thaliana]	76	262	7e-21
FLS2 [A.thaliana]	76	258	5e-19
Xa21 [O. sativa]	76	279	1e-26
Cf-9 [L. pimpinellifolium]	78	260	3e-13
FLS2 [A.thaliana]	78	260	1e-27
FLS2 [A.thaliana]	78	260	2e-21
FLS2 [A.thaliana]	79	258	3e-25
FLS2 [A.thaliana]	82	260	7e-27
CLV2 [A. thaliana]	83	260	7e-11
FLS2 [A.thaliana]	83	260	5e-19
Cf-9 [L. pimpinellifolium]	93	259	3e-16
Cf-9 [L. pimpinellifolium]	97	260	4e-16
Cf-9 [L. pimpinellifolium]	97	259	1e-14
CLV2 [A. thaliana]	100	258	5e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	320	342	out -> in

Report for 5255.m00215

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)