Report for 5256.m00164

 > 5256.m00164, length: 898, copies: 1 

MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRM

AMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPW

VSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQKFDDKLSNMRIGRRPGRPQGVRVGRFINAAGTTGF

PTGKRANTQACPERYSHYKQPDSAAILKKCDGQPLALVTIGEFLQANGWPTGPNCEDLCNRLHYHLENDKTLERM

RRVLVRNYTSLPGHALKACLLYFGMFPSDHPIRRKSLLRRWLAEGFVEPVSSSSNLDSTAAFDVLMDRNIIEPIN

VSNNDKVKTCQTYGMMREFISHMSISQNFVTFFCDDKFLPKYVRRLSLHGDTVVNGDNFNGIDLSLVRSLVVFGE

AGTTVLDFSKYQLLRVLDLEKCDDLNDDHLKEICNLVLLKYLSLGGNISKLPKDIAKLKDLEALDVRRSKVKIMP

VEVFGLPCLIHLLGKFKLSDKVKQKTEVQEFLSKGKSNLQTLAGFASNGSEGFLHLMRYMNKLRKLKIWCTSSAG

STDWTDLREAIQQFILDEKEANIGTRSLSLHFTGCSEDAINSLKEPCYLSSLKLHGNFPQLPQFVTSLRGLKELC

LSSTKFTTGLLEALSNLSYLQYLKLVADELEKFIIKVQGFPRLLCLCIVLQCPTFPVIEEGALPFLVTLQLLCKD

LHGLSDIKIECFKHLQEVTLHSGVTPATRQEWVKAAKEHPNRPKVLLLKSVDTAESEHTDVDSVMEAVKSETTEY

SIAPEGPEQVIDMNNKMQLDHGLESSSVLNKQNNFADQSSSKDQLHYSFNNMGLSDVSPAVSELPNGMVPSCT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	251	352	3.1e-11

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	463	487	2.7
LRR [sensitive, ls]	463	487	30
LRR [sensitive, ls]	488	509	0.83
LRR [sensitive, ls]	488	509	9
LRR [sensitive, ls]	510	532	5.4
LRR [sensitive, ls]	510	532	60
LRR [sensitive, ls]	670	693	0.75
LRR [sensitive, ls]	670	693	8.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	245	770	8e-23
Pib [Oryza sativa].	247	537	1e-32
Mla1 [Hordeum vulgare].	248	810	1e-33
Pi-ta [Oryza sativa]	251	537	6e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Chloramphenicol acetyltransferase	6	197	1.7e-128

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5256.m00164

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)