Report for 5264.m00143

 > 5264.m00143, length: 1072, copies: 1 

MAAMLDAFASSLARILAETAKEEVEALLGVPGEISRLEATLGDLRAVLSDAERARDRDAAVDRWVRELRDAMYDA

DDILDECQAAAGGEAATPVAMAGCCCCFRGVRVPALSCFRDPVRAREIGKRVRALNRRLDGIERRSSRFGFVSQT

RIISSSPSPCCSRRADSGDGRRTALGLIRSDVVGEKIAEDTRMLADILVSKTTDLDDAGGGCNLIPTIAVTGAGG

IGKTTLARMVFGDATVQESFDARIWLFVGRDADEVTMLRSAIAHAAGAASCEGLAVAGDKDLLERALQRAVTHRK

VLLVMDDVWSDAAWNELLRVPLSHGAPGSRILVTTRNDGVAHRMKVRYLHRVDKLRRQDAWSLLKKQIVLNKSDE

AELDELEDIGMQIVDRCDGLPLAIKMIGGLLLSKSRTRGAWMEVSRHSAWCKHEVNDEINKVVCLSYGELPSHLK

QCFVYCSLFPRGEVIESRTIVRMWIAEGFVQDSTGSGLPEAVAAQYYKELVLRNLLDPSDGYYDQLGCTMHDVVR

SFAQHVAKDEGLSINEMQKQTIGDALGTLKFRRLCISNKQVEWDALQRQVSLRTLILFRSIVTKHKNFLNNLSCL

RVLHLEDANLIVLPDSICHLKHLRYLGLKGTYISALPNLIGNLRFLQHIDLCGCINVSELPESIVRLRKLRSLDI

RHTMVSSVPRGFGKLENLVEMLGFPTDLDDSTHDWCSLEELGSLPNLSALHLEVLEKATLGQMAARSKLSSKQNL

TQLELRCTSRISANGTVQGGISEEDCERIENVFEHLRPPPSIDRLTIAGYFGHRLPQWMATATAFRSLRRLVLED

YACCDRLPGGLGQLPYLDYLWIEHAPSIEHVSHDFILPPVGIAVDGNAPSTTTTTTKTEGAGIAFPKLKRLGFQG

MLRWASWDWDEHVQAMPALESLTVENSKLNRLPPGLVYHTRALKALVLTNAVSLESVENLHSLVELYLADNPKLE

MVVNCSSLTKIEILRCPELKAFDRLPAVRSIVWEDLDADTLPGYLQEAKDASSEEWRSVRHVQQLKVFGFKPQSE

TSECYFLYTKEPYHVETNISKA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	166	485	1e-64
NB-ARC [Pfam fs]	218	485	1.2e-67
LRR [Pfam ls]	599	621	1.8
LRR [Pfam ls]	622	644	2.4
LRR [Pfam ls]	669	691	0.34
LRR [Pfam ls]	962	984	7.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	599	621	0.057
LRR [sensitive, ls]	599	621	1.8
LRR [sensitive, ls]	622	644	0.078
LRR [sensitive, ls]	622	644	2.4
LRR [sensitive, ls]	645	668	0.35
LRR [sensitive, ls]	645	668	11
LRR [sensitive, ls]	669	691	0.011
LRR [sensitive, ls]	669	691	0.34
LRR [sensitive, ls]	749	787	2.1
LRR [sensitive, ls]	749	787	66
LRR [sensitive, ls]	918	941	0.64
LRR [sensitive, ls]	918	941	20
LRR [sensitive, ls]	962	984	0.24
LRR [sensitive, ls]	962	984	7.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	10	760	4e-47
RPM1 [A. thaliana]	12	699	2e-51
Pi-ta [Oryza sativa]	32	725	1e-32
I2 [L. esculentum]	180	995	4e-70
N [N. glutinosa]	211	664	2e-13
Xa1 [Oryza sativa]	213	1000	6e-43
Pib [Oryza sativa].	215	671	1e-44
RPS2 [A. thaliana]	218	735	1e-39

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	33	53

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5264.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)