Report for 5271.m00193

 > 5271.m00193, length: 634, copies: 1 

MSHSINVHPRASFSSLDVEGVQEVEHTRMSVKCSITIIIQLLFCYMLCQPCYGTLSDIQCLKRLKESVDPNNKLE

WTFTNTTEGSICGFNGVECWHPNENKILSLHLGSMGLKGHFPDGLENCSSMTSLDLSSNSLSGPIPADISKQLPF

ITNLDLSYNSFSGEIPESLANCTYLNIVNLQNNKLTGAIPGQLGILSRLSQFNVANNQLSGPIPSSFGKFASSNF

ANQDLCGRPLSNDCTATSSSRTGVIIGSAVGGAVIMFIIVGVILFIFLRKMPAKKKEKDLEENKWAKNIKSAKGA

KVSMFEKSVAKMKLNDLMKATGDFTKDNIIGSGRSGTMYKATLPDGSFLAIKRLQDTQHSESQFASEMSTLGSVR

QRNLLPLLGYCIAKKERLLVYKYMPKGSLYDQLHQQTSEKKALEWPLRLKIAIGSAKGLAWLHHSCNPRILHRNI

SSKCILLDDDYDPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGVVLLELVTGE

EPTQVKNAPENFKGSLVDWITYLSNNAILQDAVDKSLIGKDHDAELLQFMKVACSCVLSAPKERPTMFEVYQLMR

AIGEKYHFSAADDELTMQPQNAEAEKLDELIVAN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	125	149	0.17
LRR [Pfam ls]	150	173	0.083
LRR [Pfam ls]	198	221	4.8
Ser/Thr pkinase [Pfam fs]	324	529	1.9e-35
Ser/Thr pkinase [Pfam ls]	324	599	2.6e-31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	101	124	2.6
LRR [sensitive, ls]	101	124	29
LRR [sensitive, ls]	125	149	0.016
LRR [sensitive, ls]	125	149	0.17
LRR [sensitive, ls]	150	173	0.0076
LRR [sensitive, ls]	150	173	0.083
LRR [sensitive, ls]	174	197	0.9
LRR [sensitive, ls]	174	197	9.8
LRR [sensitive, ls]	198	221	0.43
LRR [sensitive, ls]	198	221	4.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	56	415	1e-20
FLS2 [A.thaliana]	57	236	7e-16
Xa21 [O. sativa]	77	225	7e-23
CLV2 [A. thaliana]	80	214	5e-11
Xa21 [O. sativa]	80	204	1e-10
Cf-9 [L. pimpinellifolium]	98	216	5e-13
FLS2 [A.thaliana]	98	219	8e-14
Xa21 [O. sativa]	98	222	4e-13
Xa21 [O. sativa]	98	233	4e-12
Xa21 [O. sativa]	100	216	3e-14
CLV2 [A. thaliana]	101	213	3e-12
FLS2 [A.thaliana]	101	216	8e-12
CLV2 [A. thaliana]	102	214	2e-11
FLS2 [A.thaliana]	102	608	5e-61
FLS2 [A.thaliana]	102	218	1e-10
FLS2 [A.thaliana]	105	232	2e-14
FLS2 [A.thaliana]	105	214	9e-13
Cf-9 [L. pimpinellifolium]	106	286	3e-12
FLS2 [A.thaliana]	112	224	5e-14
FLS2 [A.thaliana]	112	216	9e-13
FLS2 [A.thaliana]	114	218	5e-13
Xa21 [O. sativa]	116	218	1e-10
Pto [L. esculentum]	288	595	1e-40
Rpg1 [Hordeum vulgare]	317	602	7e-26
Rpg1 [Hordeum vulgare]	321	603	8e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	249	271	in -> out

Report for 5271.m00193

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)