Report for 5271.m00197

 > 5271.m00197, length: 918, copies: 2 

MEAAIVSASTGVMRSLLAKLTNLLGGEYKLLKWLRREMEFLESELRSMSIFLERLEDTQKLHPQMKDWRDRVREL

AYDIEDCIDDFILQLDSKDAKVGFGQKLLASRRIGHMIRELKARVMEESERQRRYMLDGLASGPSVRVKVDPRLS

ALYVDEDRLVGIDAPRDEIIGRLLDKRRSASAKQVMTISIVGCGGLGKTTLANQIYCKIKGKFECAAFASVFQNP

NTKKVLTNILSQVATTAAVEDDEQAIINKLREYLSDKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRIH

DIAKLCCSSHGDYIYEMKPLGVIDSKILFDKRIFDPEERRPPQLTEVSEEILKKCGGLPLAIISISSLLASKPKS

KDQWDRVKVSLSSTLERTPDIETMEWVLSLSYSDLPNHLKTCLLYLSIFPEGYEINRERLVSRWIAEGFIYKKHG

QNPYEVGDSYFNELVNRSLIQPANIKPDGQTNACRVDDTVHDFIVSMSVEENFVTLFGGSKLVPRSHGKVRRLSI

QNGGIQENIVTSTHLVTSQVRSLTLFAVEMPSLLGFGMLRVLDLEDCYALEDHHLTNLERLVQLRYLSIRTSPIS

ELPKQIGQLQYLETLDLRATGVEELPSTIGRLKSLVRLFVDYHVKLPKEISNMHALEELTSFSALMYSPDFLKEL

GQLTNMRVLRVICDCDSFKGDAGSCLENLASSLCNLGTYNLHSLFVDINGYGEDNFSLDTWQPVPSRLRRFSIDR

WCPINKIPNWVGSLINLEELVLYVNKIWQEDFELLGHMPALSSLTIYSNTALQGRIIISGFHSTKFFKFYCNPAG

LTFDAGSLLKLECLDVIMNVFNTKSSNGSFDFGIQYLTNLRNVYIQLDCNGSTGGELEAAKASIKSSVNKLPGQP

KLNLSTLNENMLVHEEAN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	144	450	5.1e-60
NB-ARC [Pfam ls]	144	450	3.2e-60

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	563	587	2.8
LRR [sensitive, ls]	563	587	31
LRR [sensitive, ls]	588	610	0.54
LRR [sensitive, ls]	588	610	5.9
LRR [sensitive, ls]	611	633	0.7
LRR [sensitive, ls]	611	633	7.7
LRR [sensitive, ls]	766	789	1.1
LRR [sensitive, ls]	766	789	12
LRR [sensitive, ls]	790	815	6.3
LRR [sensitive, ls]	790	815	69

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	1	695	2e-80
I2 [L. esculentum]	4	659	5e-44
Mla1 [Hordeum vulgare].	10	902	1e-147
RPM1 [A. thaliana]	17	818	6e-68
Pib [Oryza sativa].	48	306	1e-14
L6 [L. usitatissimum]	152	820	7e-12
M [L. usitatissimum]	154	810	3e-14
Pib [Oryza sativa].	155	635	4e-69
Xa1 [Oryza sativa]	168	684	2e-31
RPS2 [A. thaliana]	188	620	5e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5271.m00197

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)