Report for 5273.m00185

 > 5273.m00185, length: 1135, copies: 2 

MAIVLDAFASYVGDLLKQVAKDEVNLLFGVSGEIATLHDKLRILKDYLADADRRRITDQSVQGWVTKLKHAMYDA

TDILDLCHLKAMQRQRGGGSSSSSNPVGCLDSLLFCLRNPLFAHDIGSRIKALNTRLDAICKSAAAFSFLKLEAY

EDMAAPRRSSATDRRTDPVLGKERSGVVGEKIEEDTSALVQRLTNGNTAMTTIMVVAVVGTGGIGKTTLAKKVFN

DETIQKAFHKKIWLSVTEDENEVELLREAIKSAGGGSGAGDARDSNSKSLLVDAIRNKRFFLVLDDMWSDRAWWN

LLREPFSHGAVGSRVLITTRHDDVARGMQAVRPFHHVHKLYPRDAWSLLKKQVASSDMEELEIDDMLKDIGMEII

DKCDGLPLAVKVMGGLLRRREKQRADWEQVLQDFIWSVPPGELNDAVYLSYQDLPSCLKQCFLHYSLLPKNVEFY

DVTVIGMWISEGFLHGDTDDLEKLGERYYQELIYRNLIEPDVEYADQCVSTMHDVIRSFAQDISRDEALVVSTSD

ERGKGALRSQKFLRLSVETNDFQPNDELEWKLIQGQGSLRTLIVIGELKIDHGDSLINFTSLRTLHIEDTNCSAS

LVESLHQLKHLRYLFLECSDIARLLQNISKLKLLQYLEIISENLVRLPNSIVKLGQLRHLDLLGISISGIPRQFC

RLTNLRYLYGFPVQADGDWCSLQELGPLAKLRRLALRKLENVPVTSLAREARLGEKLHLRYLRLECSSRLGEDGL

VEDEKGVSEEEQRRIEEVLDELTPPLCLENIDITGYFGQRLPRWMMSGAAGAYMRLLIVTMDDLVCCTQLPDGLC

QLPCLNFFQVTRAPAIKHVSPKFVTMQPSSSQFRHAHAFPKLKEMRLIDMVEFEEWEWDHQLNNVPAMPELEELM

LENCKLRCLPPGLSSQATALTSMGLCDIKYLNFVESFASLVKLELQDNPDLERVTSMPRLQKLIIIGCPKMRTLE

GVPELRKLALEDCDMEQLPRYLQQGVSPMHLVLDCSLELLTSIALGESGPEWGKLSHVQHVKAYADQGDDKRKWH

VLYTREPYSFETNIGDSPSSNSGGKSAQLLLLISVHNTLFSLFLPMFVPSFNCMMHLPTVSISLNGQLQRMSRRQ

ILRRLKAPKG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	469	2.5e-59
NB-ARC [Pfam ls]	159	469	1.7e-59
LRR [Pfam ls]	895	918	0.41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	586	609	0.87
LRR [sensitive, ls]	586	609	9.5
LRR [sensitive, ls]	610	632	0.92
LRR [sensitive, ls]	610	632	10
LRR [sensitive, ls]	656	678	0.67
LRR [sensitive, ls]	656	678	7.4
LRR [sensitive, ls]	733	758	6.7
LRR [sensitive, ls]	733	758	73
LRR [sensitive, ls]	895	918	0.037
LRR [sensitive, ls]	895	918	0.41
LRR [sensitive, ls]	939	964	1.1
LRR [sensitive, ls]	939	964	12
LRR [sensitive, ls]	979	998	4.3
LRR [sensitive, ls]	979	998	47

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	744	7e-43
RPM1 [A. thaliana]	12	961	2e-44
I2 [L. esculentum]	13	988	3e-84
Pi-ta [Oryza sativa]	29	709	3e-31
Xa1 [Oryza sativa]	151	985	4e-52
Pib [Oryza sativa].	158	660	3e-35
M [L. usitatissimum]	182	517	3e-11
RPS2 [A. thaliana]	205	974	1e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5273.m00185

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)