Report for 5311.m00258

 > 5311.m00258, length: 795, copies: 1 

MQIWCRCICGWLQVDLEAQGYRGWRIWRRYLTGCTTQISVRHDLSGQIKRIKSRLDQISENHKEFKIEHTPGAWT

SSITEVAAWDNIGDAPVGFDGYLRALENHLLSHEHTPQQRFISILGETGIGKSTLMLTICNKIIKDHENHFDKLI

WYNMPPNSSANDLLKQVYERAPDKVPSEGEDTDITKKLRSFLHDKRYLVILGGINSITVLNCVKASLPDNRNGSR

VVLILEPESQEVAKHADTLNKKVDADSKNISGSTIQLGRLNESQSAELFCRRVYGYNYTKPRGYKVSYNEQVFKI

TGGHPLAIVVLAGLLRSKEMPVEWDSVLQQLMPGVEAGESQGNKIAGVLLTKEKPFEWDALLQQLMPTTEAKLSN

RMTIERIFSTSFDDLPHDLKSCFLYFAAYPTNITHPADQIMRMWIAEGFIKPEKGKNMEDLAQEYLKELISRFLV

EVKYRNECEKIELVQVHNRLLRFLQSEAREASFIEIHDNTDVLAPAAVRRLSIQNDSGNYIPFGNRFPKLRSFIC

RVEEGEGASATPDLKNDPKNIPRKDPLKFLCGSKFLRVISIGGIHLAELPDAIGDMIHLRYIGVTSCDLENLPSS

IGRLLNLQTLDIRNSKVKIIAPKFWRIKTLRHVIAAQLQLPNSVGELNNLQTLHGVKPAENWGGLTCPLDMMTNL

QSLELHGFNDANHGVALERALQKLELLGHLKLTGDKIPSSVFTAPSLRYVESLVLDGDIKWADNSSNTSNYSPEV

ALGICELRPNLTVLKLNSVSKELEEFIEKIRPHLTVYECPTRTDA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	72	430	8.4e-15
NB-ARC [Pfam fs]	92	228	1.3e-08
NB-ARC [Pfam fs]	295	331	2.9e-06
NB-ARC [Pfam fs]	345	430	5.6e-19
LRR [Pfam ls]	606	628	5.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	583	605	1.1
LRR [sensitive, ls]	583	605	12
LRR [sensitive, ls]	606	628	0.48
LRR [sensitive, ls]	606	628	5.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	20	760	5e-41
RPS2 [A. thaliana]	25	623	1e-16
Pi-ta [Oryza sativa]	92	654	5e-27
Pib [Oryza sativa].	104	637	2e-22
I2 [L. esculentum]	117	655	5e-23
Mla1 [Hordeum vulgare].	117	653	3e-28
Xa1 [Oryza sativa]	117	783	1e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5311.m00258

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)