Report for 5313.m00106

 > 5313.m00106, length: 897, copies: 1 

MGHSPTSWRIIHLLVFLIIVLDHALIISADTDPQDTSALNGIAASWDNAKSKLSEWVGNDPCGEKWPGVYCTQNR

VTSIRLSSFGLSGSLSGDIQSLSELQYLDLSYNNLSGPLPPNIGSLSNLESLSVVGCQFSGDIPKELSQLPKLRF

LSLNNNRFTGSIPPSIGNLSNMYWLDLGENRLTGSLPVSDGTNTGLDNLTNALHLLLDNNNFTGGIPPTLTLLTK

LEVLHLENNKLTGPLPDLTGMDSLYVVNLENLHITGELPQPLFKLPAIQTLGLKGNNFNGTLTIGSDYSSTLSLI

DLQDNQITTLAVSGAQYNKKLILVGNPICVQGNNEALYCKSSQQANPAAKPYSTQSICPGLPPTCLSDQYLSPNC

TCAVPYMGTLHFRSPPFFDLSNDTFFVLLEENMKEAFLGKQLPVESIALDNPAFGPSNNLDINLRVFPSGKIRFG

KEDISYIGFMLNNQTYKPHAPGINYGPYYFIGQSYPFAETLSAPRQTKKNQSLIIGVSAGGAFVVVSLLVLFTVL

FFRRNKRPKLQPQPRSPSYASWDIKSTSISTPHLQGARVFTFDELKKITNSFSDANDIGTGGYGKVYRGVLPNGH

LIAVKRSEQGSLQGNLEFRTEIELLSRVHHKNLVSLVGFCFDQGEQMLVYEYVPNGTLKDSLTGKSGVRLDWKRR

LRVVLGAAKGIAYLHELADPPIVHRDIKSSNILLDGNLHTKVSDFGLSKPLNQDGRGQVTTQVKGTMGYLDPEYY

MTQQLTEKSDVYSFGVLLLEVITARKPLERGRYIVREVKGAMDRTKDLYGLHELLDPMLAPTSLAGFELYVDLAL

KCVEEAGMDRPSMSEVVAEIEKIMKMAGVNPKVDSASNSMSYNSRTPRHPYSGESQFDYSGGIPSSSRVEPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	99	122	0.007
LRR [Pfam ls]	123	146	0.33
LRR [Pfam ls]	147	170	0.0018
LRR [Pfam ls]	201	224	4.3
LRR [Pfam ls]	225	247	0.09
Ser/Thr pkinase [Pfam fs]	577	773	3e-44
Ser/Thr pkinase [Pfam ls]	577	842	1.2e-40

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	99	122	0.00064
LRR [sensitive, ls]	99	122	0.007
LRR [sensitive, ls]	123	146	0.03
LRR [sensitive, ls]	123	146	0.33
LRR [sensitive, ls]	147	170	0.00016
LRR [sensitive, ls]	147	170	0.0018
LRR [sensitive, ls]	171	195	1.1
LRR [sensitive, ls]	171	195	12
LRR [sensitive, ls]	201	224	0.39
LRR [sensitive, ls]	201	224	4.3
LRR [sensitive, ls]	225	247	0.0082
LRR [sensitive, ls]	225	247	0.09
LRR [sensitive, ls]	248	271	1.2
LRR [sensitive, ls]	248	271	13
LRR [sensitive, ls]	296	319	0.76
LRR [sensitive, ls]	296	319	8.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	14	305	3e-27
Xa21 [O. sativa]	44	287	2e-25
Cf-9 [L. pimpinellifolium]	46	340	1e-17
Cf-9 [L. pimpinellifolium]	57	248	9e-13
FLS2 [A.thaliana]	57	307	1e-22
FLS2 [A.thaliana]	57	265	4e-21
FLS2 [A.thaliana]	65	848	9e-66
Cf-9 [L. pimpinellifolium]	66	326	3e-12
Cf-9 [L. pimpinellifolium]	67	360	1e-13
CLV2 [A. thaliana]	67	308	4e-27
FLS2 [A.thaliana]	67	308	4e-27
Xa21 [O. sativa]	67	264	2e-18
CLV2 [A. thaliana]	73	308	9e-21
Cf-9 [L. pimpinellifolium]	74	307	3e-23
Xa21 [O. sativa]	74	308	1e-23
CLV2 [A. thaliana]	75	288	1e-16
FLS2 [A.thaliana]	75	308	1e-27
FLS2 [A.thaliana]	75	308	6e-23
Cf-9 [L. pimpinellifolium]	76	328	9e-13
Xa21 [O. sativa]	76	305	1e-26
Xa21 [O. sativa]	76	305	2e-22
CLV2 [A. thaliana]	78	242	6e-18
Cf-9 [L. pimpinellifolium]	86	307	4e-18
Rpg1 [Hordeum vulgare]	559	871	2e-42
Pto [L. esculentum]	565	851	2e-60
Rpg1 [Hordeum vulgare]	565	848	7e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	10	27	out -> in
putative TM domain	503	525	in -> out

Report for 5313.m00106

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)