Report for 5313.m00111

 > 5313.m00111, length: 1433, copies: 1 

MAEVVVLAGSGWVVSPIMRKIINDAKTYLGKDMAQELDDLETTVIPQFRFVIKAAERSPRRMELERWLWKLKAAF

YDAEDLLDMHEYKLLQRKATGNISMPSTSNSRLALVSTASNLLPANRRLLRKLTELKNILVEAKNFHREFLSAGT

TAAAITGPHVNSSSSTITTSLPTSKVFGRDADRDHIISFLCNPDDTNTSGERNYCTSAIVGHGGAGKTTLAQYIY

NDERVVNHFDVRMWICISRKLDVHRHTAEIMESATNNNRVVHFTNLNNLQCALRGVLQESQRFLLVLDDVWFYGF

QDEEEWAKLLAPLVSQQRGSQVLVTSRSGRLPAPLCCKQVFPLQNMKDTEFLALFKYHAFSGAGMREQHRSEELL

DIAGRIAQKLGQSPLAAKVVGSQLSRNMTITAWKDALKSDNLGETRGSLLWSYQNLDPNIQRCFMYCSLFPKGHV

FVINELVHLWVAEGFVVDSSDVNSSDQSRTVEDIARAYFREMVSACFFQPVPKSFDTSYSMHDIIHDFAETLSRG

DCFRLEDCMVTEIPHTVQHLSVYVDRMGQHKQSICKLIHLRTVIFMEPVMDDANKLFHEVFCNMKKLRVLLLCFY

NSRKLPQSIDEFKHLRYLNILKTSISELPGSLCTLYHLQFLRVHRDVNNLPAKICNLSKLRHLERCSPSLSFGPI

AQLPVPQIPYIGKLTKLQHVLEFSVAKQIGYELQQLRDMRELRNILQINYLENVRTKDEALEAMLHNKSRLDRLE

LSWSYIDDLHINDNLHLEVLEGLKPPRELNDLIVTGYRSPVYPSWLLEDSYFVNLKTLVLSNCTSLECLPSSVQL

IKHFRHIALRNILNLKTLPCFPGGLVSLNMMGCPLLRFISREELGQDVQHTDLMKVGNLSSTLARILEAKRGSKI

SKKVRDTLVFEHSSLKQLMALMDDDISAQLQTIKSAIESEREEVLLEENIIKAWLYCQEKRTKLIYSRPTENLLL

LPSSIENLSLSSCNLTDGALAVCLQGLTSLKWLSIERIMNLTSFPSPQVLQRLTMLKRLYIRSCWCLRSLGGLRE

ATSLSEVKIDSCISLELVDENGIAVMPSSIGKLSLFGCILGANFLSTDFPRLRSISITCCRSSSSFAIGHLRSLE

SLSLNNMPDLCFLEGLSCPHLQDIHLINVPNLTAESFSRHHAWKSLAISSSAMLSLMLSIKDFMLPEKLCFEQYD

EPSITFQSSANFTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLKRSCQ

APNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQPVVWAPVRHRPLTEGSPHPLSSARW

RNPTKMQGMFMHKDLLLRSRKNPILAANLRVQISVQASIIMGLQGAVSQTALQPGQPSRGCTGRCPSNSRELVFR

KQQTALEM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	471	3.7e-48
NB-ARC [Pfam ls]	159	471	8.6e-48
LRR [Pfam ls]	804	827	4.1
LRR [Pfam ls]	979	1003	1.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	614	636	3.5
LRR [sensitive, ls]	614	636	39
LRR [sensitive, ls]	745	774	3.1
LRR [sensitive, ls]	745	774	34
LRR [sensitive, ls]	804	827	0.37
LRR [sensitive, ls]	804	827	4.1
LRR [sensitive, ls]	979	1003	0.097
LRR [sensitive, ls]	979	1003	1.1
LRR [sensitive, ls]	1004	1026	3.9
LRR [sensitive, ls]	1004	1026	43
LRR [sensitive, ls]	1030	1052	6.7
LRR [sensitive, ls]	1030	1052	74
LRR [sensitive, ls]	1123	1147	3.3
LRR [sensitive, ls]	1123	1147	36
LRR [sensitive, ls]	1214	1236	0.98
LRR [sensitive, ls]	1214	1236	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	29	817	1e-29
I2 [L. esculentum]	31	1293	6e-84
Pi-ta [Oryza sativa]	67	663	4e-23
Xa1 [Oryza sativa]	94	1252	3e-82
RPM1 [A. thaliana]	161	844	1e-35
RPS2 [A. thaliana]	171	982	1e-30
Pib [Oryza sativa].	174	663	7e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	120	140

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5313.m00111

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)