Report for 5317.m00030

 > 5317.m00030, length: 1369, copies: 1 

MAAGGGGGGAARDPGDLRHLAATKRTHRPLAEFRRLRPGRGTHAACSTKCAGKTGADHMSHEIEEKVRARRRRRS

TPPPRPRPCREARELNSTQEMGGRPVSPSAPRPKELDLQTEHSLEGSPPPFPWQNRRMAGVGLVVGGWIAKAVIA

NILSRVRSLLHDNFSLQKDTEKMLNDLEVALPRIEAVIEAAERRSIESSALSTWLQQLKDAVSHAGDVVDDFEAK

TIKDQVESKSKVSAKAYSTVKALKALVFSDSELKKLKHAVRRLENVSARVDSFIELIRLNDDDTVGRIGHSLHSE

TSSLLGDTKVIGRDEEINLILDIILGYRYHLPRTSEHARPDDQPKFGQRGTLFDKLRKIFLTGTAESSKSSDKAK

LEELEARKKGNKIEEEDPSKDCIEIGEYEPNQKGQTERLDYNSSDVHETSGSSQNLGILPIVGINGVGKTTVAQA

VFNNKRVKMCFDLTAWVYVSDNISGKQIIQRIIMSLEPWSGLTDDALDLDNLQHKLIGIIRSKRLFLVLDGVSDD

IIIVWSQLRSILRCSGPQSMVLVTTQKYSIANLLGTMGPITLNTLEQTDFRYLFNHLVFDDCFYHHYEVHLFESI

CGKIADKFHGLPLAAKTVAPLLRANRNMEYWENVLGSDWWNISDHGLGINVLPALGIGCLYPALRQCLLFCSIFP

RNYVFEKERVVQMWVAHGFIQSSDRRDIVPENVAKNWFDELVDRSFLQPTVWQGRYVMHDLIREFSVAVSSNEYY

VFHRNSKVLPQFANHISVDNDNFDLQWGHYDHKRLQTLMFFGHHRVDKNYGTLGSIVRKSTSLRVLDLSYICMSN

VSQASDVLCKLSHLRYLDLSFTGIKDLPEAFGNLYHLQVLDLRGCIIEKLPKNMNNLINLRHLYADSQTTALIYA

VGQLTKLQELQEFRVRLEDGYKINELRDMKDLRKLYITNLEKVSSWQEATDAKLVEKKSLDYLQLKWVYQVPESR

STSQLNKDILDGLHPHFQLKRLKILNYMGIDFPYWVQRLTDLVAVNIINCRWLSVLPPLGELPRLKKLSLFGLSS

ITHINDQVYGTNDVIFPYLEELHFSELFSWEQWSEAEYKLLIPHLRKLGINACSKLSLLPIETLSSSVKELHLSS

CTSYISMLPAYLKRLTSLTKLSIQDCSATLLIPCHSLTLLEHLQLESCFDVHFEGGMQYFTKLKKLEVHRCFDVT

QNIYEQTSLVERYSLMGGLQSLIHLVIDDRFMYYRYYHMLNTLCSIRTMKFCAFDLSEFTTEDEEWLQQLQSLQE

IQFASCRNLLRLPSNLNNMCNLKKVVLNDCCKLQSLPLNGLPDNLKEFHVSGGSEVLEQQCQKTDGDEWQKISHV

PYVRINGRTIQMISHDLGS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	395	700	2e-25
NB-ARC [Pfam fs]	425	700	3.7e-31
LRR [Pfam ls]	838	860	0.013
LRR [Pfam ls]	861	880	0.24

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	247	269	5.1
LRR [sensitive, ls]	247	269	110
LRR [sensitive, ls]	812	837	2
LRR [sensitive, ls]	812	837	42
LRR [sensitive, ls]	838	860	0.00064
LRR [sensitive, ls]	838	860	0.013
LRR [sensitive, ls]	861	880	0.012
LRR [sensitive, ls]	861	880	0.24
LRR [sensitive, ls]	1016	1038	2.4
LRR [sensitive, ls]	1016	1038	50
LRR [sensitive, ls]	1117	1141	0.68
LRR [sensitive, ls]	1117	1141	14
LRR [sensitive, ls]	1272	1295	1.4
LRR [sensitive, ls]	1272	1295	29
LRR [sensitive, ls]	1296	1317	0.53
LRR [sensitive, ls]	1296	1317	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	195	1198	1e-88
RPS2 [A. thaliana]	421	1158	2e-20
Pib [Oryza sativa].	425	894	1e-28
Xa1 [Oryza sativa]	425	1196	3e-73
Mla1 [Hordeum vulgare].	427	937	7e-27
Pi-ta [Oryza sativa]	431	898	2e-18
RPM1 [A. thaliana]	433	1123	1e-36
Xa1 [Oryza sativa]	1035	1337	5e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	364	385

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5317.m00030

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)