Report for 5328.m00129

 > 5328.m00129, length: 974, copies: 1 

MAEMIAVTLSAKVAAALSGPAAVRLSSLAGVRSGIEAAARDLELLRAFLRFVDSLHGSDPLADAWVDQVRDVAFD

LEDAADEYAFLSGHGFFRHGANLGAWFALSRRLWRARERLRELSAAKEQLGIRPAEVSASSSGGAGGLSAAMIGR

KIAEASHFVEEGEIVGFAMHERLLMKWLTGDTDPRQLLIAVCGMGGVGKTTLVTNVYKKVAATCHFDCAAWVAVS

KSFTTDDLLRRIAKEFHRDNRGCVPWDVDNMDYRSLVEALRGHLAKKRYLLLLDDVWDAHAWYEIRHAFVDDGTK

SRIIITTRSQDIASLASSNRIIRLEPLSEQEAWSLFCNTTFREDADRECPYYLRHWASKILDRCCGLPLAIVSVG

NLLVLKDRTEFAWKSVYDSLVWYESSDHGIGQVSSILNLSFDDLPYHLKKCFLYCSIYPEDFMIKRKILIRAWIA

EGLIKEKGQGTMEEVADDYLNQLVQRSLLQAAVQNEFGRAKRCCIHDLIREMIVHRSTKERFFVFSKCTVTLKSS

KKARHLVFDRCRSDRLSAPKMNSLRSFHAFKADLDASLFSSFRLLTVLNLWFTPTAKLPSAVASLLNLRYLGIRS

TLIGELPEELGQLHNLQTLDAKWSMVQRLPQSITKLKNLRHLVLYRRRSADFTYPGPGTAIALPDGLKNLTCLQT

LKYIEADEKMVRSLGSLKHMRSLELCGVHESNLIHLPSSISKMTCLLRLGIISQDANVKLDLEPFYPPPIKLQKL

ALAGMLVRGKLPSWFGSLNNLMQLRLHSSNLMEDSLGLLSSLPRLLHLSLVNAYSGKSLTFANGYFPALKKLTLH

DLPNLSHLEFQKGSLVDLHVLMLGRCAQLNKLPQDIRNLVNLETMDLFEMPSEIIQNIQNNEILQEHNHESEHTI

VIKNIRWNNGKLLEEKVYINLSLLESRPFIDKEQHNVKSQAEITADLVTFPRDILGDIESLTCGNVTESQSVLF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	147	459	2e-81
NB-ARC [Pfam ls]	147	459	5.5e-82
LRR [Pfam ls]	592	614	3.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	592	614	0.16
LRR [sensitive, ls]	592	614	3.2
LRR [sensitive, ls]	615	637	1.3
LRR [sensitive, ls]	615	637	26
LRR [sensitive, ls]	746	769	1.4
LRR [sensitive, ls]	746	769	28
LRR [sensitive, ls]	770	793	3.8
LRR [sensitive, ls]	770	793	77
LRR [sensitive, ls]	842	865	0.76
LRR [sensitive, ls]	842	865	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	28	922	1e-123
Mla1 [Hordeum vulgare].	30	803	6e-58
Pib [Oryza sativa].	44	317	2e-14
I2 [L. esculentum]	45	888	8e-47
Pi-ta [Oryza sativa]	53	621	1e-51
Xa1 [Oryza sativa]	103	711	4e-39
L6 [L. usitatissimum]	145	428	1e-15
M [L. usitatissimum]	145	428	6e-13
Pib [Oryza sativa].	160	848	1e-61
N [N. glutinosa]	188	845	1e-11
RPS2 [A. thaliana]	188	889	4e-46

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5328.m00129

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)